View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16006_low_49 (Length: 308)

Name: NF16006_low_49
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16006_low_49
NF16006_low_49
[»] chr4 (11 HSPs)
chr4 (1-307)||(2761698-2762004)
chr4 (1-148)||(49499523-49499671)
chr4 (1-78)||(40459491-40459568)
chr4 (101-152)||(55162571-55162622)
chr4 (101-152)||(40459368-40459419)
chr4 (96-151)||(69782-69837)
chr4 (102-152)||(13652952-13653002)
chr4 (102-152)||(13661077-13661127)
chr4 (16-98)||(55162712-55162793)
chr4 (101-152)||(28968977-28969033)
chr4 (84-130)||(42899892-42899938)
[»] chr7 (17 HSPs)
chr7 (5-184)||(48653439-48653618)
chr7 (1-183)||(22078061-22078244)
chr7 (1-196)||(21491085-21491282)
chr7 (1-148)||(18366919-18367067)
chr7 (1-98)||(10288380-10288477)
chr7 (1-91)||(15873564-15873654)
chr7 (1-78)||(9993862-9993939)
chr7 (101-182)||(40106197-40106278)
chr7 (101-152)||(10288529-10288580)
chr7 (1-54)||(11035972-11036025)
chr7 (101-182)||(12196434-12196515)
chr7 (101-196)||(11036084-11036180)
chr7 (101-152)||(15873713-15873764)
chr7 (103-152)||(49170042-49170092)
chr7 (104-152)||(12911434-12911482)
chr7 (16-90)||(24056859-24056937)
chr7 (16-78)||(49169945-49170006)
[»] chr2 (15 HSPs)
chr2 (1-184)||(12774028-12774213)
chr2 (5-123)||(35670383-35670501)
chr2 (1-98)||(40448001-40448098)
chr2 (101-152)||(18292432-18292483)
chr2 (104-152)||(40729168-40729216)
chr2 (101-152)||(40447898-40447949)
chr2 (16-70)||(41339855-41339909)
chr2 (16-73)||(36731835-36731892)
chr2 (101-154)||(41339991-41340044)
chr2 (101-154)||(28266849-28266903)
chr2 (110-152)||(35670499-35670541)
chr2 (103-148)||(34397559-34397604)
chr2 (96-151)||(44789002-44789057)
chr2 (16-72)||(40729032-40729087)
chr2 (16-92)||(44789032-44789107)
[»] chr1 (23 HSPs)
chr1 (12-182)||(18472537-18472707)
chr1 (5-183)||(35761646-35761825)
chr1 (1-92)||(6836424-6836515)
chr1 (101-196)||(16075115-16075210)
chr1 (1-98)||(338628-338725)
chr1 (1-98)||(43406956-43407053)
chr1 (1-98)||(37666767-37666864)
chr1 (101-152)||(43407105-43407156)
chr1 (100-152)||(8421979-8422031)
chr1 (101-152)||(338525-338576)
chr1 (101-152)||(9537129-9537180)
chr1 (101-152)||(37666916-37666967)
chr1 (103-196)||(28561790-28561885)
chr1 (101-170)||(33007389-33007458)
chr1 (104-152)||(25921905-25921953)
chr1 (96-151)||(6836394-6836449)
chr1 (29-86)||(36386384-36386441)
chr1 (16-92)||(19198397-19198472)
chr1 (34-86)||(20148261-20148313)
chr1 (134-196)||(26317592-26317654)
chr1 (16-70)||(33007254-33007307)
chr1 (17-70)||(24055806-24055859)
chr1 (17-70)||(24276027-24276080)
[»] chr6 (11 HSPs)
chr6 (5-152)||(13773025-13773172)
chr6 (84-288)||(24163211-24163416)
chr6 (1-183)||(32449855-32450038)
chr6 (1-98)||(34636707-34636804)
chr6 (1-70)||(24164334-24164403)
chr6 (3-77)||(20558035-20558109)
chr6 (101-152)||(10751298-10751349)
chr6 (101-152)||(23260352-23260403)
chr6 (16-98)||(10751164-10751246)
chr6 (16-107)||(26182305-26182395)
chr6 (101-152)||(34636604-34636655)
[»] chr8 (7 HSPs)
chr8 (5-154)||(40841119-40841269)
chr8 (16-151)||(22815930-22816064)
chr8 (101-152)||(41958160-41958211)
chr8 (83-155)||(22635703-22635775)
chr8 (82-151)||(44436540-44436609)
chr8 (16-123)||(44436597-44436703)
chr8 (113-155)||(3189140-3189182)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-150)||(32921-33078)
[»] chr3 (15 HSPs)
chr3 (1-98)||(16975840-16975937)
chr3 (1-98)||(7336283-7336380)
chr3 (1-78)||(11937478-11937555)
chr3 (6-78)||(5004325-5004397)
chr3 (16-92)||(9104629-9104705)
chr3 (1-98)||(46404190-46404287)
chr3 (101-152)||(5004458-5004509)
chr3 (101-152)||(7336432-7336483)
chr3 (16-151)||(17542310-17542444)
chr3 (101-152)||(16975737-16975788)
chr3 (101-151)||(43277784-43277834)
chr3 (113-196)||(9104553-9104637)
chr3 (101-152)||(46404339-46404390)
chr3 (106-195)||(8731179-8731269)
chr3 (106-195)||(9083066-9083156)
[»] scaffold0013 (1 HSPs)
scaffold0013 (15-151)||(242648-242783)
[»] chr5 (14 HSPs)
chr5 (1-98)||(537340-537437)
chr5 (51-155)||(25101568-25101672)
chr5 (51-155)||(25160661-25160765)
chr5 (16-196)||(4557610-4557792)
chr5 (20-78)||(42861884-42861942)
chr5 (96-151)||(6309186-6309241)
chr5 (100-152)||(40691292-40691344)
chr5 (101-152)||(537237-537288)
chr5 (101-152)||(30910215-30910266)
chr5 (115-152)||(42861832-42861869)
chr5 (16-71)||(40691422-40691476)
chr5 (16-78)||(6309230-6309291)
chr5 (16-70)||(38001530-38001583)
chr5 (101-152)||(38001400-38001448)
[»] scaffold0413 (1 HSPs)
scaffold0413 (1-47)||(1-47)
[»] scaffold1838 (1 HSPs)
scaffold1838 (104-152)||(603-651)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 2761698 - 2762004
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaataat 100  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||  |||||     
T  2761698 ataacagacacaatgcaatgcaatcatgtgtaaaatgcatgctcttaaatactaaatgattcggatataacccgccactaaggcaccacacaggaataac 2761797  T
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatgaattctaaattccaccacttaagcaccacaaaataatatgatatcaat 200  Q
    || |||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||     
T  2761798 cctccactaaggcaccacacaaatgcatatgccatgcatgatcatgaaaatgaatcctaaatcccaccacttaagcaccacaaaataatatgatatcaa- 2761896  T
Q  201 tccca-cactaaggcaaccgcaaaataaaataa-aacacattatcatgcacatgacaatataatcttttatgagatcttattcctcttattattatccca 298  Q
     |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  2761897 -cccaccactaaggcaaccgcaaaataaaataataacacattatcatgcacatgacaatataatcttttaggagatcttattcctcttattattatacca 2761995  T
Q  299 gtttcatat 307  Q
    ||| |||||    
T  2761996 gttccatat 2762004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 49499671 - 49499523
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaataat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||   ||||||||||| ||||||     
T  49499671 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaattctacatgatctggatataacccgccacacaggcaccacacagaaataac 49499572  T
Q  101 ccgccactaagacaccacacagatgcatatgc-catgcatgatcatgaa 148  Q
    |||||||  || ||||||||||||||||||||  |||||||||||||||    
T  49499571 ccgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaa 49499523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 40459568 - 40459491
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccac 78  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||| ||||    
T  40459568 ataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccgccac 40459491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 55162622 - 55162571
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  55162622 ccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 55162571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 40459419 - 40459368
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  40459419 ccgccactaaggcaccacacagatgcatatgacatgcatgatcatgaaaatg 40459368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 69837 - 69782
Alignment:
Q  96 ataatccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaat 151  Q
    |||| |||||||  || |||||||||||||||||||||||||||||||||||||||    
T  69837 ataacccgccacacaggcaccacacagatgcatatgccatgcatgatcatgaaaat 69782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 13653002 - 13652952
Alignment:
Q  102 cgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    |||||||||| ||||||||| |||||||| |||||||||||||||||||||    
T  13653002 cgccactaaggcaccacacaaatgcatataccatgcatgatcatgaaaatg 13652952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 13661127 - 13661077
Alignment:
Q  102 cgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    |||||||||| ||||||||| |||||||| |||||||||||||||||||||    
T  13661127 cgccactaaggcaccacacaaatgcatataccatgcatgatcatgaaaatg 13661077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 55162793 - 55162712
Alignment:
Q  16 caatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaata 98  Q
    |||||||||||||  ||| ||||||||||||| | |||| |||||||||||||||||| ||||   ||||||||||| |||||    
T  55162793 caatgcaattatgcataagatgcatgctcttata-actacatgatccggatataacccgccacacaggcaccacacagaaata 55162712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 28968977 - 28969033
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgc-----catgcatgatcatgaaaatg 152  Q
    ||||||||||| ||||||||||||||||||||     ||||||||||||||||||||    
T  28968977 ccgccactaaggcaccacacagatgcatatgccatgccatgcatgatcatgaaaatg 28969033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 42899892 - 42899938
Alignment:
Q  84 caccacacataaataatccgccactaagacaccacacagatgcatat 130  Q
    ||||||||| ||||||||||||| |||  ||||||||||||||||||    
T  42899892 caccacacagaaataatccgccattaaagcaccacacagatgcatat 42899938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 184
Target Start/End: Original strand, 48653439 - 48653618
Alignment:
Q  5 cagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaataatccgc 104  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||   |||||| |||| |||||| ||||    
T  48653439 cagacccaatgcaatgcaattatgtgtaaaatgcaagctcttaaatactacatgatccggatataacccgccacacaggcaccgcacagaaataacccgc 48653538  T
Q  105 cactaagacaccacacagatgcatatgccatgcatgatcatgaaaatgaattctaaattccaccacttaagcaccacaaa 184  Q
    |||  ||||||||||||||||||||||  ||||||||||||||||||| ||  | ||| || ||||||| ||||||||||    
T  48653539 cacacagacaccacacagatgcatatgttatgcatgatcatgaaaatggatcatgaatcccgccacttaggcaccacaaa 48653618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 22078244 - 22078061
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaataat 100  Q
    |||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||| ||||   ||||||||||||||||||     
T  22078244 ataacagacctaatgcaatgcaatgatgtgtaaaatacatgctcttaaatactatatgatccggatatatcccgccacacaggcaccacacataaataac 22078145  T
Q  101 ccgccactaagacaccacacagatgcatatgc-catgcatgatcatgaaaatgaattctaaattccaccacttaagcaccacaa 183  Q
     ||||||  || ||||||||||||||||||||  |||||||||||||||||||||  |||||| || ||||||| |||| ||||    
T  22078144 acgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagactaaatcccgccacttaggcacaacaa 22078061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 21491085 - 21491282
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaataat 100  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||| || ||| |||||||||| ||||||| ||||   ||||||||||| ||||||     
T  21491085 ataacagacccaatgcaatgcaattatgtgtaaattgcatgcttttagattctacatgatccggaaataacccgccacacaggcaccacacagaaataac 21491184  T
Q  101 ccgccactaagacaccacacagatgcatatgc-catgcatgatcatgaa-aatgaattctaaattccaccacttaagcaccacaaaataatatgatat 196  Q
     ||||||  || ||||||||||||||||||||  ||||||||||||||| ||||||  |||||| |  ||||||| |||| ||||   ||||||||||    
T  21491185 acgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaacaatgaagactaaatccagccacttaggcacaacaatgcaatatgatat 21491282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 18366919 - 18367067
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaataat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||| ||||    |||||||||| ||||||     
T  18366919 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttagattctacatgatccggatataacccgccacacatgcaccacacagaaataac 18367018  T
Q  101 ccgccactaagacaccacacagatgcatatgc-catgcatgatcatgaa 148  Q
    || ||||  |  ||||||||| || |||||||  |||| ||||||||||    
T  18367019 ccaccacccatgcaccacacaaatacatatgctaatgcgtgatcatgaa 18367067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 10288380 - 10288477
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaata 98  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| ||| ||||   ||||||||||| |||||    
T  10288380 ataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatatatcccgccacacaggcaccacacagaaata 10288477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 15873564 - 15873654
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacac 91  Q
    |||||||||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||| ||| ||||   ||||||||||    
T  15873564 ataacagacccaatgcaatgcaatgatatgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacac 15873654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 9993939 - 9993862
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccac 78  Q
    ||||||||||||||||||||||||   |||||||||||||||| |||||||||| |||||||||||| ||||| ||||    
T  9993939 ataacagacccaatgcaatgcaatgccgtgtaaaatgcatgcttttaaatactacatgatccggataaaacccgccac 9993862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 40106278 - 40106197
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatgaattctaaattccaccacttaagcaccaca 182  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |  ||||| ||| ||||| | ||||||||    
T  40106278 ccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaatccgccactaaggcaccaca 40106197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 10288529 - 10288580
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10288529 ccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 10288580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11035972 - 11036025
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatacta 54  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  11035972 ataacagacccaatgcaatgcaatgttgtgtaaaatgcatgctcttagatacta 11036025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 12196434 - 12196515
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatgaattctaaattccaccacttaagcaccaca 182  Q
    ||||||||||| ||||||||||||| |||||||||| ||||||||||||||| |  ||||| ||| ||||| | ||||||||    
T  12196434 ccgccactaaggcaccacacagatgaatatgccatgtatgatcatgaaaatgcagactaaagtccgccactaaggcaccaca 12196515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 11036084 - 11036180
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgcca-tgcatgatcatgaaaatgaattctaaattccaccacttaagcaccacaaaataatatgatat 196  Q
    ||||||||||| ||||||| |||||||||||| | ||||||||||||||||||||  |||||| || ||||||| |||| ||||   ||||||||||    
T  11036084 ccgccactaaggcaccacagagatgcatatgctaatgcatgatcatgaaaatgaagactaaatcccgccacttaggcacaacaatgcaatatgatat 11036180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 15873713 - 15873764
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||||| |||||||||||||||||||||||||| || ||||||||||    
T  15873713 ccgccactaaggcaccacacagatgcatatgccatgcacgaacatgaaaatg 15873764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 49170042 - 49170092
Alignment:
Q  103 gccactaagaca-ccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  49170042 gccactaaggcatccacacagatgcatatgccatgcatgatcatgaaaatg 49170092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 12911434 - 12911482
Alignment:
Q  104 ccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    |||||||| ||||||||||||||||||||||| |||||| |||||||||    
T  12911434 ccactaaggcaccacacagatgcatatgccatacatgattatgaaaatg 12911482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 24056859 - 24056937
Alignment:
Q  16 caatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataa----cccaccactatggcaccaca 90  Q
    |||||||||||||||||| |||||||||| |||| |||| ||||||||  |||||    |||||||||| |||||||||    
T  24056859 caatgcaattatgtgtaagatgcatgctcctaaacactacatgatccgattataatgagcccaccactaaggcaccaca 24056937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 49169945 - 49170006
Alignment:
Q  16 caatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccac 78  Q
    |||||||||||||  ||| ||||||||||||| | |||| |||||||||||||||||| ||||    
T  49169945 caatgcaattatgcataagatgcatgctcttata-actatatgatccggatataacccgccac 49170006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 12774028 - 12774213
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaataat 100  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||    |||||||||| ||||||     
T  12774028 ataacagactcaatgcaatgcgattatgtgtaaaatgcatgctcttaaatactacatgatccagatataacccgccacacatgcaccacacaaaaataac 12774127  T
Q  101 ccgccac--taagacaccacacagatgcatatgccatgcatgatcatgaaaatgaattctaaattccaccacttaagcaccacaaa 184  Q
    |||||||  |||| |||||||||||||||||||| ||||||||||||||||||||||  | ||| || ||||||| ||||||||||    
T  12774128 ccgccactataaggcaccacacagatgcatatgcgatgcatgatcatgaaaatgaatcatgaatcccgccacttaggcaccacaaa 12774213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 35670383 - 35670501
Alignment:
Q  5 cagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaataatccgc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||| | ||||   |||| ||||||||||||| ||||    
T  35670383 cagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactacatgatccaaatataactcgccacacaggcatcacacataaataacccgc 35670482  T
Q  105 cactaagacaccacacaga 123  Q
    |||  ||||||||||||||    
T  35670483 cacacagacaccacacaga 35670501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 40448098 - 40448001
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaata 98  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||||| |||||||||||||||||| ||||   ||||||||||| |||||    
T  40448098 ataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttaggtactacatgatccggatataacccgccacacaggcaccacacagaaata 40448001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 18292432 - 18292483
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18292432 ccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 18292483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 40729168 - 40729216
Alignment:
Q  104 ccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40729168 ccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 40729216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 40447949 - 40447898
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  40447949 ccgccactaaggcaccacacagatgcatatgacatgcatgatcatgaaaatg 40447898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 41339855 - 41339909
Alignment:
Q  16 caatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataa 70  Q
    ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||    
T  41339855 caatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataa 41339909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 36731835 - 36731892
Alignment:
Q  16 caatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataaccc 73  Q
    |||||||||  |||||||||||||||||||||||||||| ||||||| ||||||||||    
T  36731835 caatgcaatgctgtgtaaaatgcatgctcttaaatactacatgatccagatataaccc 36731892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 41339991 - 41340044
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatgaa 154  Q
    ||||||||||| |||||||||| ||||||||||||||||| |||||||||||||    
T  41339991 ccgccactaaggcaccacacaggtgcatatgccatgcatggtcatgaaaatgaa 41340044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 28266849 - 28266903
Alignment:
Q  101 ccgccactaagaca-ccacacagatgcatatgccatgcatgatcatgaaaatgaa 154  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||    
T  28266849 ccgccactaagacatccacatagatgcatatgccatgcatgatcattaaaatgaa 28266903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 35670499 - 35670541
Alignment:
Q  110 agacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  35670499 agacaccacacagatgcatatgctatgcatgatcatgaaaatg 35670541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 34397559 - 34397604
Alignment:
Q  103 gccactaagacaccacacagatgcatatgccatgcatgatcatgaa 148  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||    
T  34397559 gccactaaggcaccacacagatgcatataccatgcatgatcatgaa 34397604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 44789057 - 44789002
Alignment:
Q  96 ataatccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaat 151  Q
    |||| |||||||  || ||||||||||||||||||||| |||||||||||||||||    
T  44789057 ataacccgccacacaggcaccacacagatgcatatgccttgcatgatcatgaaaat 44789002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 40729032 - 40729087
Alignment:
Q  16 caatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacc 72  Q
    ||||||||||||| |||| ||||||||||||| | |||| |||||||||||||||||    
T  40729032 caatgcaattatgcgtaagatgcatgctcttata-actatatgatccggatataacc 40729087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 44789107 - 44789032
Alignment:
Q  16 caatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacaca 92  Q
    ||||||||||||| |||| |||||||||| || | |||| |||||||||||||||||| ||||   |||||||||||    
T  44789107 caatgcaattatgcgtaagatgcatgctcgtata-actatatgatccggatataacccgccacacaggcaccacaca 44789032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 18472537 - 18472707
Alignment:
Q  12 aatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaataatccgccactaag 111  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||   ||||||||||| |||||| ||||||   ||    
T  18472537 aatgcaatgcaattatgtgtaaaatgtatgctcttaaatactacatgatccggatataacccgccacataggcaccacacagaaataacccgccatacag 18472636  T
Q  112 acaccacacagatgcatatgccatgcatgatcatgaaaatgaattctaaattccaccacttaagcaccaca 182  Q
     |||||||||||||||||||| ||||||||||||||||||| ||  | ||| ||||||||||  |||||||    
T  18472637 gcaccacacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttagacaccaca 18472707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 35761646 - 35761825
Alignment:
Q  5 cagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaataatccgc 104  Q
    |||||||||||||||||||| |||||||||||| ||||||||| |||||| |||||||||||||| ||| ||||   ||||||||||| |||||| ||||    
T  35761646 cagacccaatgcaatgcaatgatgtgtaaaatgtatgctcttagatactacatgatccggatatatcccgccacacaggcaccacacagaaataacccgc 35761745  T
Q  105 cactaagacaccacacagatgcatatgc-catgcatgatcatgaaaatgaattctaaattccaccacttaagcaccacaa 183  Q
    |||  || ||||||||||||||||||||  |||||||||||||||||||||   |||||||| ||||||| |||| ||||    
T  35761746 cacacaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagattaaattccgccacttaggcacaacaa 35761825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 6836515 - 6836424
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacaca 92  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||   |||||||||||    
T  6836515 ataacagactcaatgcaatgcaatgatgtgtaaaatgcatgctcttaaatactacatgatccggatataacccgccacacaggcaccacaca 6836424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 16075210 - 16075115
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatgaattctaaattccaccacttaagcaccacaaaataatatgatat 196  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| || ||||| | |||||||||| |||||||||||    
T  16075210 ccgccactaagacaccacacagatgcatttgccatgcatgatcatgaaaatgcatcctaaatcccgccactcaggcaccacaaagtaatatgatat 16075115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 338725 - 338628
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaata 98  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||||| |||||||||||||||||| ||||   ||||||||||| |||||    
T  338725 ataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttaggtactacatgatccggatataacccgccacacaggcaccacacagaaata 338628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 43406956 - 43407053
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaata 98  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| ||| ||||   ||||||||||| |||||    
T  43406956 ataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatatatcccgccacacaggcaccacacagaaata 43407053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 37666767 - 37666864
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaata 98  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||| |||||| |||||||||||||| ||| ||||   ||||||||||| |||||    
T  37666767 ataacagacccaatgcagtgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatatatcccgccacacaggcaccacacagaaata 37666864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 43407105 - 43407156
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43407105 ccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 43407156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 8422031 - 8421979
Alignment:
Q  100 tccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  8422031 tccgccactaaggcaccacatagatgcatatgccatgcatgatcatgaaaatg 8421979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 338576 - 338525
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  338576 ccgccactaaggcaccacacagatgcatatgacatgcatgatcatgaaaatg 338525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 9537129 - 9537180
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  9537129 ccgccactaaggcaccacacaaatgcatatgccatgcatgatcatgaaaatg 9537180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 37666916 - 37666967
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  37666916 ccgccactaaggcaccacacagatgcatatgacatgcatgatcatgaaaatg 37666967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 28561885 - 28561790
Alignment:
Q  103 gccactaagacaccacacaga--tgcatatgccatgcatgatcatgaaaatgaattctaaattccaccacttaagcaccacaaaataatatgatat 196  Q
    ||||||||| |||||||||||  |||||||  ||||||||||||||||||||||   ||||| || |||||||| |||||||||  ||||||||||    
T  28561885 gccactaaggcaccacacagaaatgcatatatcatgcatgatcatgaaaatgaaaattaaatcccgccacttaaacaccacaaagaaatatgatat 28561790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 33007389 - 33007458
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatgaattctaaattccaccac 170  Q
    ||||||||||  |||||||||||||||||||| ||||||||| ||||||||| |  ||||| ||||||||    
T  33007389 ccgccactaaagcaccacacagatgcatatgctatgcatgattatgaaaatgtagactaaaatccaccac 33007458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 25921953 - 25921905
Alignment:
Q  104 ccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    |||||||| ||||||||||||||||||| |||| |||||||||||||||    
T  25921953 ccactaaggcaccacacagatgcatatgtcatgtatgatcatgaaaatg 25921905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 6836449 - 6836394
Alignment:
Q  96 ataatccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaat 151  Q
    |||| |||||||  || |||||||||||||||||||||||||||||||| ||||||    
T  6836449 ataacccgccacacaggcaccacacagatgcatatgccatgcatgatcaggaaaat 6836394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 36386384 - 36386441
Alignment:
Q  29 tgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcac 86  Q
    |||||||||||||||||||||||||| |||||| |||||| || | |||||| |||||    
T  36386384 tgtaaaatgcatgctcttaaatactacatgatctggatatgactcgccactaaggcac 36386441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 19198397 - 19198472
Alignment:
Q  16 caatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacaca 92  Q
    |||||||||||||  ||| ||||||||||||| | |||| |||||||||||||||||| ||||   |||||||||||    
T  19198397 caatgcaattatgcataagatgcatgctcttata-actatatgatccggatataacccgccacacaggcaccacaca 19198472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 20148261 - 20148313
Alignment:
Q  34 aatgcatgctcttaaatactaaatgatccggatataacccaccactatggcac 86  Q
    ||||||||||| |||| |||||||||||||||||||| || |||||| |||||    
T  20148261 aatgcatgctcctaaaaactaaatgatccggatataagccgccactaaggcac 20148313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 26317654 - 26317592
Alignment:
Q  134 atgcatgatcatgaaaatgaattctaaattccaccacttaagcaccacaaaataatatgatat 196  Q
    |||||||||||||||||||||  ||||||||| ||||||||   |||||||  ||||||||||    
T  26317654 atgcatgatcatgaaaatgaagactaaattccgccacttaaatgccacaaagcaatatgatat 26317592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 33007254 - 33007307
Alignment:
Q  16 caatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataa 70  Q
    ||||||||||||| |||| ||||||||||||| | |||| |||||||||||||||    
T  33007254 caatgcaattatgcgtaagatgcatgctcttata-actatatgatccggatataa 33007307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 24055806 - 24055859
Alignment:
Q  17 aatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataa 70  Q
    ||||||| ||||  ||| |||||||||||||| ||||| |||||||||||||||    
T  24055806 aatgcaactatgcataagatgcatgctcttaattactacatgatccggatataa 24055859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 24276080 - 24276027
Alignment:
Q  17 aatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataa 70  Q
    ||||||| ||||  ||| |||||||||||||| ||||| |||||||||||||||    
T  24276080 aatgcaactatgcataagatgcatgctcttaattactacatgatccggatataa 24276027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 13773025 - 13773172
Alignment:
Q  5 cagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaataatccgc 104  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    |||||||||| || ||||||||    
T  13773025 cagatccaatgtaatgcaattatgtgtaaaatgcatgctcttaaatactacatgatccggatataatccaccacacaagcaccacacagaagtaatccgc 13773124  T
Q  105 cactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    |||  || ||||||||||||| |||||| |||||||||||||||||||    
T  13773125 cacacaggcaccacacagatgtatatgctatgcatgatcatgaaaatg 13773172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 84 - 288
Target Start/End: Complemental strand, 24163416 - 24163211
Alignment:
Q  84 caccacacataaataatccgccactaagacaccacacagatgcatatgcca-tgcatgatcatgaaaa-tgaattctaaattccaccacttaagcaccac 181  Q
    ||||||||| |||||||| | |||||||||||||||||||| ||||||| | ||||| |||||||||| ||||  |||||| || |||||||| ||||||    
T  24163416 caccacacagaaataatctgtcactaagacaccacacagatacatatgctaatgcataatcatgaaaaatgaagactaaatcccgccacttaaacaccac 24163317  T
Q  182 aaaataatatgatatcaattccca-cactaaggcaaccgcaaaataaaataa-aacacattatcatgcacatgacaatataatcttttatgagatcttat 279  Q
    ||||||||||||||| ||  |||| ||||||| ||||| ||||  ||||||| |||||||||||||||||||||||  |||||| |||||||||||||||    
T  24163316 aaaataatatgatattaa--cccatcactaagacaaccacaaag-aaaataataacacattatcatgcacatgacacaataatcctttatgagatcttat 24163220  T
Q  280 tcctcttat 288  Q
    |||||||||    
T  24163219 tcctcttat 24163211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 32449855 - 32450038
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaataat 100  Q
    ||||||||| |||| ||||||||| |||||||||||||||||||||| |||||| |||||||||||||| ||| ||||   ||||||||||| ||||||     
T  32449855 ataacagactcaatccaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatatatcccgccacacaggcaccacacagaaataac 32449954  T
Q  101 ccgccactaagacaccacacagatgcatatgc-catgcatgatcatgaaaatgaattctaaattccaccacttaagcaccacaa 183  Q
    |||||||  || ||||||||||||||||||||  |||||||||||||||||||||   ||||| || ||||||| |||| ||||    
T  32449955 ccgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagattaaatcccgccacttaggcacaacaa 32450038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 34636804 - 34636707
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaata 98  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||   ||||||||||| |||||    
T  34636804 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacataggcaccacacagaaata 34636707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 24164403 - 24164334
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataa 70  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  24164403 ataacagaccaaatgcaatgcaattatgtgtaaaatacatgctcttaaatactacatgatccagatataa 24164334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 20558109 - 20558035
Alignment:
Q  3 aacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccacca 77  Q
    |||||||||||||||||||||| |||| |||||  ||||||||||||||||| |||||||||||||| |||||||    
T  20558109 aacagacccaatgcaatgcaatgatgtataaaacacatgctcttaaatactacatgatccggatataccccacca 20558035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 10751298 - 10751349
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10751298 ccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 10751349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 23260352 - 23260403
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23260352 ccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 23260403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 10751164 - 10751246
Alignment:
Q  16 caatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaata 98  Q
    ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||   ||||||||||| |||||    
T  10751164 caatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 10751246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 26182305 - 26182395
Alignment:
Q  16 caatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaataatccgccac 107  Q
    |||||||||||||  ||| ||||||||| ||| | |||| |||||||||||||||||||||||   ||||||||||| ||||||||||||||    
T  26182305 caatgcaattatgcataagatgcatgcttttata-actatatgatccggatataacccaccacataggcaccacacagaaataatccgccac 26182395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 34636655 - 34636604
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||||| |||||||||||||||||||||||||| || ||||||||||    
T  34636655 ccgccactaaggcaccacacagatgcatatgccatgcacgaacatgaaaatg 34636604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 40841119 - 40841269
Alignment:
Q  5 cagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaataatccgc 104  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||   ||||||||| | |||||| ||||    
T  40841119 cagacccaatgcaatgcgattatgtgtaaaatgtatgctcttaaatactacatgatccggatataacccgccacacaggcaccacatagaaataagccgc 40841218  T
Q  105 cactaagacaccacacagatgcatatgc-catgcatgatcatgaaaatgaa 154  Q
    |||  || ||||||||||||||||||||  |||||||||||||||||||||    
T  40841219 cacacaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaa 40841269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 22815930 - 22816064
Alignment:
Q  16 caatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaataatccgccactaagacac 115  Q
    |||||||||||||||||| ||||||||||||| | |||| ||||||| |||||||||| ||||    |||||||||| |||||| |||| ||  || |||    
T  22815930 caatgcaattatgtgtaagatgcatgctcttata-actatatgatccagatataacccgccacacaagcaccacacagaaataacccgctacacaggcac 22816028  T
Q  116 cacacagatgcatatgccatgcatgatcatgaaaat 151  Q
    | ||||||||||||||||||||||||||||||||||    
T  22816029 cgcacagatgcatatgccatgcatgatcatgaaaat 22816064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 41958160 - 41958211
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41958160 ccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 41958211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 22635703 - 22635775
Alignment:
Q  83 gcaccacacataaataatccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatgaat 155  Q
    |||||| ||| ||||||  ||||||  || |||||||||||||||||||||||||||||||||||||||||||    
T  22635703 gcaccatacagaaataactcgccacacaggcaccacacagatgcatatgccatgcatgatcatgaaaatgaat 22635775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 44436609 - 44436540
Alignment:
Q  82 ggcaccacacataaataatccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaat 151  Q
    ||||||||||| |||||  |||||||  || |||||||||||||||||||||| ||||||||||||||||    
T  44436609 ggcaccacacagaaatatcccgccacacaggcaccacacagatgcatatgccaagcatgatcatgaaaat 44436540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 44436703 - 44436597
Alignment:
Q  16 caatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaataatccgccactaagacac 115  Q
    ||||||||||||| |||| ||||||||||||| | |||  |||||||||||||||||| ||||   | ||||||| | |||||| |||||||  || |||    
T  44436703 caatgcaattatgcgtaagatgcatgctcttata-actgtatgatccggatataacccgccacacagacaccacataaaaataacccgccacacaggcac 44436605  T
Q  116 cacacaga 123  Q
    ||||||||    
T  44436604 cacacaga 44436597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 3189140 - 3189182
Alignment:
Q  113 caccacacagatgcatatgccatgcatgatcatgaaaatgaat 155  Q
    ||||||||| ||||||||| |||||||||||||||||||||||    
T  3189140 caccacacaaatgcatatgtcatgcatgatcatgaaaatgaat 3189182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 32921 - 33078
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggca-ccacacataa-ata 98  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||   |||| ||||||| || |||    
T  32921 ataacagactcaatgcaatgcaatgatgtgtaaaatgcatgctcttaaatactacatgatccggatataacccgccacacaggcatccacacagaatata 33020  T
Q  99 at------ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaa 150  Q
    ||      ||| |||  || ||||||||||||||||||| |||||||||| |||||||    
T  33021 attatgacccgtcacacaggcaccacacagatgcatatgtcatgcatgataatgaaaa 33078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 16975937 - 16975840
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaata 98  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||| ||||   ||||||||||| |||||    
T  16975937 ataatagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttaaatagtacatgatccggatataacccgccacacaggcaccacacagaaata 16975840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 7336283 - 7336380
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaata 98  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||| |||||| |||||||||||||| ||| ||||   ||||||||||| |||||    
T  7336283 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttagatactacatgatccggatatatcccgccacacaggcaccacacagaaata 7336380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 11937478 - 11937555
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccac 78  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||||||||||| ||||    
T  11937478 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgttcttatattctacatgatccggatataacccgccac 11937555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 5004325 - 5004397
Alignment:
Q  6 agacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccac 78  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  5004325 agacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatataacccgccac 5004397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 9104705 - 9104629
Alignment:
Q  16 caatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacaca 92  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||   |||||||||||    
T  9104705 caatgcaatgatgtgtaaaatgcatgctcttaaatactacatgatccggatataacccaccacacaggcaccacaca 9104629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 46404190 - 46404287
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaata 98  Q
    |||||||||||||||||||||||| || || |||| |||||||||||||||||| |||||||||||||| ||| ||||   ||||||||||| |||||    
T  46404190 ataacagacccaatgcaatgcaatgatatgcaaaacgcatgctcttaaatactacatgatccggatatatcccgccacacaggcaccacacagaaata 46404287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 5004458 - 5004509
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5004458 ccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 5004509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 7336432 - 7336483
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7336432 ccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 7336483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 17542310 - 17542444
Alignment:
Q  16 caatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaataatccgccactaagacac 115  Q
    ||||||| |||||  ||| ||||||||||||| | |||  ||||||||||||||| || ||||   ||||||||||| |||||| |||||||  || |||    
T  17542310 caatgcagttatgcataagatgcatgctcttata-actgtatgatccggatataaaccgccacacaggcaccacacagaaataacccgccacacaggcac 17542408  T
Q  116 cacacagatgcatatgccatgcatgatcatgaaaat 151  Q
    ||||||||| ||||||| ||||||||||| ||||||    
T  17542409 cacacagatacatatgcgatgcatgatcacgaaaat 17542444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 16975788 - 16975737
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||| | |||||||||||||||||||||||| |||||||||||||||    
T  16975788 ccgccactatggcaccacacagatgcatatgccatggatgatcatgaaaatg 16975737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 43277784 - 43277834
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaat 151  Q
    ||||||||||| ||||||||||||||||||| |||| ||||||||||||||    
T  43277784 ccgccactaaggcaccacacagatgcatatgtcatgtatgatcatgaaaat 43277834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 9104637 - 9104553
Alignment:
Q  113 caccacacagatgcatatgcca-tgcatgatcatgaaaatgaattctaaattccaccacttaagcaccacaaaataatatgatat 196  Q
    |||||||||||||||||||| | ||||||||||||||||||||  ||||||  | ||||||| |||| |||||  ||||||||||    
T  9104637 caccacacagatgcatatgctaatgcatgatcatgaaaatgaagactaaatcacgccacttaggcacaacaaagcaatatgatat 9104553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 46404339 - 46404390
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||||| ||||||||||||||||||||||||||  | ||||||||||    
T  46404339 ccgccactaaggcaccacacagatgcatatgccatgcacaaacatgaaaatg 46404390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 8731269 - 8731179
Alignment:
Q  106 actaagacaccacacagatgcatatgcca-tgcatgatcatgaaaatgaattctaaattccaccacttaagcaccacaaaataatatgata 195  Q
    |||||| ||||||| |||||  ||||| | ||||||||||||||||||||  |||||||||||||||||  || ||||||  |||||||||    
T  8731269 actaaggcaccacatagatgtttatgctaatgcatgatcatgaaaatgaagactaaattccaccacttacacatcacaaagcaatatgata 8731179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 9083156 - 9083066
Alignment:
Q  106 actaagacaccacacagatgcatatgcca-tgcatgatcatgaaaatgaattctaaattccaccacttaagcaccacaaaataatatgata 195  Q
    |||||| ||||||| |||||  ||||| | ||||||||||||||||||||  |||||||||||||||||  || ||||||  |||||||||    
T  9083156 actaaggcaccacatagatgtttatgctaatgcatgatcatgaaaatgaagactaaattccaccacttacacatcacaaagcaatatgata 9083066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 242648 - 242783
Alignment:
Q  15 gcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaataatccgccactaagaca 114  Q
    |||||||||||||| |||| ||||||||||||| | |||| |||||| ||||||||||| ||||   ||||||||||| |||||| |||||||  || ||    
T  242648 gcaatgcaattatgcgtaagatgcatgctcttata-actatatgatctggatataacccgccacacaggcaccacacagaaataacccgccacacaggca 242746  T
Q  115 ccacacagatgcatatgccatgcatgatcatgaaaat 151  Q
    ||||||| |||||||||| ||||| ||||||||||||    
T  242747 ccacacatatgcatatgctatgcaagatcatgaaaat 242783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 537437 - 537340
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaata 98  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||| |||||| |||||||||||||| ||| ||||   ||||||||||| |||||    
T  537437 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttatatactacatgatccggatatatcccgccacacaggcaccacacagaaata 537340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 51 - 155
Target Start/End: Original strand, 25101568 - 25101672
Alignment:
Q  51 actaaatgatccggatataacccaccactatggcaccacacataaataatccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaa 150  Q
    |||| ||||||||||||||||||  |||   ||||||||||| |||||| |||||||  || |||||||||||||||||| |||||||||||||||||||    
T  25101568 actatatgatccggatataacccgtcacacaggcaccacacagaaataacccgccacacaggcaccacacagatgcatataccatgcatgatcatgaaaa 25101667  T
Q  151 tgaat 155  Q
    |||||    
T  25101668 tgaat 25101672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 51 - 155
Target Start/End: Original strand, 25160661 - 25160765
Alignment:
Q  51 actaaatgatccggatataacccaccactatggcaccacacataaataatccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaa 150  Q
    |||| ||||||||||||||||||  |||   ||||||||||| |||||| |||||||  || |||||||||||||||||| |||||||||||||||||||    
T  25160661 actatatgatccggatataacccgtcacacaggcaccacacagaaataacccgccacacaggcaccacacagatgcatataccatgcatgatcatgaaaa 25160760  T
Q  151 tgaat 155  Q
    |||||    
T  25160761 tgaat 25160765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 4557610 - 4557792
Alignment:
Q  16 caatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccactatggcaccacacataaataatccgccactaagacac 115  Q
    ||||||||||||| |||| ||||||||||||| || ||| ||| ||| |||||||||| ||||   ||||||||||| |||||| |||||||  || |||    
T  4557610 caatgcaattatgcgtaagatgcatgctcttagattctacatggtccagatataacccgccacacaggcaccacacagaaataacccgccacacaggcac 4557709  T
Q  116 cacacagatgcatatgc-catgcatgatcatgaa-aatgaattctaaattccaccacttaagcaccacaaaataatatgatat 196  Q
    |||| ||||||||||||  ||||||||||||||| ||||||  |||||| |  ||||||| |||| ||||   ||||||||||    
T  4557710 cacagagatgcatatgctaatgcatgatcatgaacaatgaagactaaatccagccacttaggcacaacaatgcaatatgatat 4557792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 42861942 - 42861884
Alignment:
Q  20 gcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccac 78  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||    
T  42861942 gcaattatgtgtaaaatgcatgctcttaaatactacatgatctggatataacccgccac 42861884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 6309241 - 6309186
Alignment:
Q  96 ataatccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaat 151  Q
    |||| |||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  6309241 ataacccgccacacagacaccacacagatgcatatgccatgcatgatcatgaaaat 6309186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 40691344 - 40691292
Alignment:
Q  100 tccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||| |||| ||||||||||||||||||||| ||||||||||||||||||    
T  40691344 tccgccaataaggcaccacacagatgcatatgccttgcatgatcatgaaaatg 40691292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 537288 - 537237
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||||| |||||||||||||||||||||||||| || ||||||||||    
T  537288 ccgccactaaggcaccacacagatgcatatgccatgcacgaacatgaaaatg 537237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 30910266 - 30910215
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||| |||||    
T  30910266 ccgctactaagagaccacacagatgcatatgccatgcatgatcatggaaatg 30910215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 42861869 - 42861832
Alignment:
Q  115 ccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    |||||||||||||||||| |||||||||||||||||||    
T  42861869 ccacacagatgcatatgctatgcatgatcatgaaaatg 42861832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 40691476 - 40691422
Alignment:
Q  16 caatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataac 71  Q
    ||||||||||||| |||| ||||||||||||| | |||| ||||||||||||||||    
T  40691476 caatgcaattatgcgtaagatgcatgctcttata-actatatgatccggatataac 40691422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 6309291 - 6309230
Alignment:
Q  16 caatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataacccaccac 78  Q
    ||||||| ||||| |||| ||||||||||||| | |||| |||||||||||||||||| ||||    
T  6309291 caatgcacttatgcgtaagatgcatgctcttata-actatatgatccggatataacccgccac 6309230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 38001583 - 38001530
Alignment:
Q  16 caatgcaattatgtgtaaaatgcatgctcttaaatactaaatgatccggatataa 70  Q
    ||||||||||||| |||| ||||||||||||| | |||| |||||||||||||||    
T  38001583 caatgcaattatgcgtaagatgcatgctcttata-actatatgatccggatataa 38001530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 38001448 - 38001400
Alignment:
Q  101 ccgccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    ||||||||| ||||||||||||||||||||| |||||  |||||||||||||    
T  38001448 ccgccacta-gacaccacacagatgcatatgtcatgc--gatcatgaaaatg 38001400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 47 - 1
Alignment:
Q  1 ataacagacccaatgcaatgcaattatgtgtaaaatgcatgctctta 47  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||    
T  47 ataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctctta 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 651 - 603
Alignment:
Q  104 ccactaagacaccacacagatgcatatgccatgcatgatcatgaaaatg 152  Q
    |||||||| || |||||| ||||||||||| | ||||||||||||||||    
T  651 ccactaaggcatcacacaaatgcatatgcctttcatgatcatgaaaatg 603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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