View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16006_low_5 (Length: 707)
Name: NF16006_low_5
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 15 - 438
Target Start/End: Complemental strand, 44728399 - 44727976
Alignment:
| Q |
15 |
cataggaagctgggttttaattccgttggctataattttagtaatgattttgagaatcacatgacataatgatatagacctaaaatccgaggttaggatc |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44728399 |
cataggaagctgggttttaattctgttggctataattttagtaatgattttgagaatcacatcacataatgatatagacctaaaatctgaggttaggatc |
44728300 |
T |
|
| Q |
115 |
ctttctactttctattattttcatttcctctactaagatcccctgttagcattatcaatattaaagacacaatttatgaaaccactatcatgtccaaaaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44728299 |
ctttctactttctattattttcatttcctctactaagatcccccgttagcattatcaatattaaagacacaatttatgaaaccactatcatgtccaaaaa |
44728200 |
T |
|
| Q |
215 |
ccggtgattgaaaatgacgagaaaagattctcggcagtgagatcttaaccatccattgtgtttaccatatgcaggcaaagtcaaatgaaaggaatctaaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44728199 |
ccggtgattgaaaatgacgagaaaagattctcggcagtgagatcttaaccatccattgtgtttaccatatgcaggcaaagtcaaatgaaaggaatctaaa |
44728100 |
T |
|
| Q |
315 |
tggtccttaattacaacggacactctccaatgagattatcacggaagagaatcctaatccgaaaatggcagggagaccatccgacccaggtactgcaggg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44728099 |
tggtccttaattacaacggacactctccaatgagattatcacggaagagaatcctaatccgaaaatggcagggagaccatccgacccaggtactgcctgg |
44728000 |
T |
|
| Q |
415 |
ctcttcatttgggatacagcaatg |
438 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
44727999 |
ctcttcatttgggatacagcaatg |
44727976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 437 - 691
Target Start/End: Complemental strand, 44727746 - 44727493
Alignment:
| Q |
437 |
tgaagagttatatatatagattcataaagatggttttctttttattgttgatttttaattttaaagaacatatagtgtaatcatttagcacgaggaaaac |
536 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44727746 |
tgaagagttatatatataaattcataaagatggttttctttt-attgttgatttttaattttaaagaacatatagtgtaatcatttagcacgaggaaaac |
44727648 |
T |
|
| Q |
537 |
gttttggatatctagcctatgctgaaacctcaaggaaacattagtagtttctagggattggcattttgcagttgcaaaaggaatattgcggagcatatat |
636 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44727647 |
gttttggatatccaggctatgctgaaacctcaaggaaacattagtagtttctagggattggcattttgcagttgcaaaaggaatattgtggagcatatat |
44727548 |
T |
|
| Q |
637 |
cccatcacctggtgatggtctatgtagtttctaggtcgggccataaaccaaaaga |
691 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44727547 |
cccatcacctggtgatggtctatgtagtttctaggtcgggccataaaccaaaaga |
44727493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University