View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_50 (Length: 306)
Name: NF16006_low_50
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 37894250 - 37893987
Alignment:
| Q |
13 |
gataattcttgtatcaataccgtacttattgacatcataacacaattgagttgtaattaatcaaattacaactcttggtttttgtgtcctcctgnnnnnn |
112 |
Q |
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| T |
37894250 |
gataattcttctatcaataccgtacttattgacatcataacacaattgagttgtaattaatcaaattacaactcttggtttttgtgtcctcctgaaaaaa |
37894151 |
T |
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| Q |
113 |
ntgaattaattacattcttaacatagagaccaaacagcaagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaac |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37894150 |
atgaattaattacattcttaacatagagaccaaacagcaagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaac |
37894051 |
T |
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| Q |
213 |
caaaccacataatgcattcacatattcttgtctctgtcttgaaaccatttccatagtcaatgac |
276 |
Q |
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| T |
37894050 |
caaaccacataatgcattcacatattcttgtctctgtcttgaaaccatttccatagtcaatgac |
37893987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 12 - 276
Target Start/End: Complemental strand, 37189351 - 37189084
Alignment:
| Q |
12 |
agataattcttgtatcaataccgtacttattgacatcataacacaattgagttgtaattaatcaaattacaactcttggtttttgtgtcctcctgnnnnn |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
37189351 |
agataattcttgtatcaataccgtacttattgacatgataacacaattgagttgaaattaatcaa-ttacaactcttggtttttgtgtcctcctcaagaa |
37189253 |
T |
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| Q |
112 |
nn----tgaattaattacattcttaacatagagaccaaacagcaagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttca |
207 |
Q |
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| T |
37189252 |
aaaaaatgaattaattacattcttaacatagagaccaaacagcaagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttca |
37189153 |
T |
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| Q |
208 |
tcaaccaaaccacataatgcattcacatattcttgtctctgtcttgaaaccatttccatagtcaatgac |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189152 |
tcaaccaaaccacataatgcattcacatattcttgtctctgtcttgaaaccatttccatagtcaatgac |
37189084 |
T |
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