View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_56 (Length: 282)
Name: NF16006_low_56
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 40064690 - 40064416
Alignment:
| Q |
1 |
cttaaacttgcattgcctttgattgtcgctgcggtaactgtaaccttgctcgaagaaacttagattgtagtatttgtagattctatgcaacctttctaca |
100 |
Q |
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| T |
40064690 |
cttaaacttgcattgcctttgattgtcgctgcggtaactgtaaccttgctcgaagaaacttagattgtagtatttgtagattctatgcaacctttctaca |
40064591 |
T |
|
| Q |
101 |
tgagattgagtttcacaaaggttacttctaaactgggaaactatctcatatggtttatggtggattgatgcttgaaattgtttgaaactatacaacaact |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40064590 |
tgagattgagtttcacaaaggttacttctaaaatgggaaactatctcatatggtttatggtggattgatgcttgaaattgttcgaaactatacaacaact |
40064491 |
T |
|
| Q |
201 |
ggtgccgctgccaataagtagaaactcatggtattacatgtccctacaattgaaacagtgatccaatctgtgctg |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
40064490 |
ggtgccgctgccaataagtagaaactcatggtattacatgtccgtacaattgaaacagtgatccaatcggtgctg |
40064416 |
T |
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