View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16006_low_6 (Length: 685)

Name: NF16006_low_6
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16006_low_6
NF16006_low_6
[»] chr2 (5 HSPs)
chr2 (16-670)||(2697884-2698521)
chr2 (16-341)||(2690451-2690785)
chr2 (450-670)||(2690078-2690301)
chr2 (176-249)||(2723502-2723575)
chr2 (176-249)||(2745332-2745405)
[»] chr4 (3 HSPs)
chr4 (16-341)||(14519610-14519940)
chr4 (179-341)||(36290785-36290947)
chr4 (176-268)||(40823639-40823731)
[»] chr8 (2 HSPs)
chr8 (176-295)||(4159599-4159718)
chr8 (227-285)||(4130245-4130303)
[»] chr7 (8 HSPs)
chr7 (176-252)||(20062383-20062459)
chr7 (182-270)||(20231732-20231820)
chr7 (179-270)||(20243801-20243892)
chr7 (176-268)||(20289420-20289512)
chr7 (179-270)||(20264188-20264279)
chr7 (176-255)||(20303867-20303946)
chr7 (176-270)||(20285109-20285203)
chr7 (176-270)||(20294826-20294920)
[»] chr3 (1 HSPs)
chr3 (178-270)||(1091432-1091524)


Alignment Details
Target: chr2 (Bit Score: 530; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 16 - 670
Target Start/End: Complemental strand, 2698521 - 2697884
Alignment:
Q  16 aatatctgactttggcttggcccggatattcggtggaaatcaaaatgaagagaatgcaaccaaagtggttggtacatagtaagtatacttttcccttgtt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2698521 aatatctgactttggcttggcccggatattcggtggaaatcaaaatgaagagaatgcaaccaaagtggttggtacatagtaagtatactttgcccttgtt 2698422  T
Q  116 tttaccctcattcagtcactaattaattcttgggagttggctaatctcaaatatatctactgcagtggttatatgtctcctgaatacgctatggaaggcc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2698421 tttaccctcattcagtcactaattaattcttgggagttggctaatctcaaatatatctactgcagtggttatatgtctcctgaatacgctatggaaggcc 2698322  T
Q  216 tagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgtgagcggccgcagaaacactagctttcgtcactcagatgattcgag 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2698321 tagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgtgagcggccgcagaaacactagctttcgtcactcagatgattcgag 2698222  T
Q  316 tctaataggatatgtaagtgtttcctacagcacatatttannnnnnnnaatttaatgcaacttgcataaatgnnnnnnncctgataaacaatttctcaat 415  Q
    ||||||||| ||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||       |||||||||||||||||||||    
T  2698221 tctaataggttatgtaagtgtttcctacagcacatatatatttttttaaatttaatgcaacttgcataaatgtttttttcctgataaacaatttctcaat 2698122  T
Q  416 aataatttttacgagtgaatcaccaattgaatccttgaaaatattttatcacattagttcttttgagttcttgaaattcttagaggaattaatactaagc 515  Q
    ||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2698121 aata-----------------accaattgaatccttgaaaatattttatcacattagttcttttgagttcttgaaattcttagaggaattaatactaagc 2698039  T
Q  516 taatcaaaatgctaaaagctaatgttttgtgatgaaatggatgtaggcatggaatctttggaatgaacgcagagcaatgcaacttcttgatccttgcatt 615  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2698038 taatcgaaatgctaaaagctaatgttttgtgatgaaatggatgcaggcatggaatctttggaatgaacgcagagcaatggaacttcttgatccttgcatt 2697939  T
Q  616 cgtgattcgagtcctacgaacaaagctttgagatgtatacaaatagggatgttat 670  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2697938 cgtgattcgagtcctacgaacaaagctttgagatgtatacaaatagggatgttat 2697884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 2690785 - 2690451
Alignment:
Q  16 aatatctgactttggcttggcccggatattcggtggaaatcaaaatgaagagaatgcaaccaaagtggttggtacatagtaagtatacttttcccttgtt 115  Q
    ||||||||||||| ||||||||| |||||| |||||||| || |||||||  | | |||||| ||| |||||| || |||||||||||||     |||||    
T  2690785 aatatctgacttttgcttggcccagatatttggtggaaaccagaatgaagccagtacaaccagagtcgttggttcacagtaagtatacttcggttttgtt 2690686  T
Q  116 tttaccctcattcagtcactaattaattcttggg---agttggctaatctcaaata--ta--tctactg--cagtggttatatgtctcctgaatacgcta 206  Q
    ||||  ||||||||| ||||  || ||||||      ||||| |||||||||| ||  ||  ||||||   ||||||||||||||||| ||| || ||||    
T  2690685 tttaagctcattcagccacttgttcattcttacttaaagttgactaatctcaactacttaactctacttttcagtggttatatgtctcatgagtatgcta 2690586  T
Q  207 tggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgtgagcggccgcagaaacactagctttcgtcactcaga 306  Q
    || ||||| || |||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||| || | |||||    
T  2690585 tgcaaggcttattttcagtcaagtcagatgtatatagttttggcgtattgctactagagattgtgagtggccgcaaaaacactagctttggtgattcaga 2690486  T
Q  307 tgattcgagtctaataggatatgtaagtgtttcct 341  Q
      |||| ||||| ||||||||||| ||| ||||||    
T  2690485 atattcaagtctcataggatatgtgagtatttcct 2690451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 450 - 670
Target Start/End: Complemental strand, 2690301 - 2690078
Alignment:
Q  450 ttgaaaatattttatcacattagttcttttgagttcttgaaatt--cttagaggaattaatactaagctaatcaaaatgctaaaagctaatgtt-ttgtg 546  Q
    |||||||| ||||||||||||||| ||||||||  |||||||||  |||||||| | |||||||||||||||  ||||||| |||||||||||| |||||    
T  2690301 ttgaaaatcttttatcacattagtccttttgagcccttgaaattgacttagagggactaatactaagctaattgaaatgcttaaagctaatgttattgtg 2690202  T
Q  547 atgaaatggatgtaggcatggaatctttggaatgaacgcagagcaatgcaacttcttgatccttgcattcgtgattcgagtcctacgaacaaagctttga 646  Q
    ||| ||||||||||||||||| |||| ||||| || |  ||||||||| || || | ||| ||||||||| ||||| |||||| |  |   | |||||||    
T  2690201 atggaatggatgtaggcatggcatctatggaacgatcagagagcaatggaaattgtggatgcttgcattcatgatttgagtcccaacactgaggctttga 2690102  T
Q  647 gatgtatacaaatagggatgttat 670  Q
    |||| |||||||||||||||||||    
T  2690101 gatgcatacaaatagggatgttat 2690078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 2723575 - 2723502
Alignment:
Q  176 tgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttgg 249  Q
    |||||||| || |||||||| ||||| || |||||||| ||  ||||||  ||||||||||||| |||||||||    
T  2723575 tgcagtggatacatgtctccggaatatgcaatggaagggctgttttcagagaaatcagatgtatttagttttgg 2723502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 2745405 - 2745332
Alignment:
Q  176 tgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttgg 249  Q
    |||||||| || |||||||| ||||| || |||||||| ||  ||||||  ||||||||||||| |||||||||    
T  2745405 tgcagtggatacatgtctccggaatatgcaatggaagggctgttttcagagaaatcagatgtatttagttttgg 2745332  T

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Target: chr4 (Bit Score: 98; Significance: 6e-48; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 14519940 - 14519610
Alignment:
Q  16 aatatctgactttggcttggcccggatattcggtggaaatcaaaatgaagagaatgcaaccaaagtggttggtacatagtaagtatacttttcccttgtt 115  Q
    |||||||||||||||||||||||||||||| |||||||| || ||||||   ||| |||||| ||| |||||||||||||||||||||||     |||||    
T  14519940 aatatctgactttggcttggcccggatatttggtggaaaccagaatgaatccaatacaaccagagtcgttggtacatagtaagtatacttcgattttgtt 14519841  T
Q  116 tttaccctcattcagtcactaattaattcttggg---agttggctaatctcaaata--tatctactgcagtggttatatgtctcctgaatacgctatgga 210  Q
    ||||  ||||||||| ||||  || ||||||      ||||| |||||||||| ||  | | || | |||||||||||||||||||||||| || ||| |    
T  14519840 tttaagctcattcagccacttgttcattcttacttcaagttgactaatctcaactaactttatatttcagtggttatatgtctcctgaatatgccatgca 14519741  T
Q  211 aggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgtgagcggccgcagaaacactagctttcgtcactcagatgat 310  Q
    |||| || | ||||  ||| |||| |||||||||||||| ||||| ||||| ||||||||||| || | || |||||| ||||||||||| |||||||||    
T  14519740 aggcgtattatcagctaaagcagacgtatatagttttggcgtattgctactggagattgtgagtggtcacaaaaacaccagctttcgtcattcagatgat 14519641  T
Q  311 tcgagtctaataggatatgtaagtgtttcct 341  Q
    || ||||| ||||||||||| ||| ||||||    
T  14519640 tcaagtctcataggatatgtgagtatttcct 14519610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 179 - 341
Target Start/End: Original strand, 36290785 - 36290947
Alignment:
Q  179 agtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgtgagcggcc 278  Q
    ||||| ||||||||||| |||||||| ||||| || ||| ||||||||||||| ||||||||||||||||| ||| | ||||||||||||||||| ||||    
T  36290785 agtggatatatgtctccagaatacgcaatggagggtctattttcagtcaaatctgatgtatatagttttggcgtacttctactagagattgtgagtggcc 36290884  T
Q  279 gcagaaacactagctttcgtcactcagatgattcgagtctaataggatatgtaagtgtttcct 341  Q
    ||| |||||||||||||||| | ||  ||||| | ||||| ||||||||||| ||||| ||||    
T  36290885 gcaaaaacactagctttcgtgattcgtatgatccaagtctcataggatatgtgagtgtctcct 36290947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 268
Target Start/End: Complemental strand, 40823731 - 40823639
Alignment:
Q  176 tgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagatt 268  Q
    ||||| ||||||||||| |||||||| || ||| |||| ||  ||||||  ||||||||||| | ||| |||||||| ||  |||||||||||    
T  40823731 tgcagcggttatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgtctttagctttggtgttttgatactagagatt 40823639  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 176 - 295
Target Start/End: Complemental strand, 4159718 - 4159599
Alignment:
Q  176 tgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgtgagcg 275  Q
    ||||||||||||||| | |||||||| || |||||||| ||  |||| |  ||||||||||| ||||| ||||| || ||| |  |||||||||| ||||    
T  4159718 tgcagtggttatatgccgcctgaatatgcaatggaaggacttttttctgagaaatcagatgtttatagctttggagttttattgttagagattgttagcg 4159619  T
Q  276 gccgcagaaacactagcttt 295  Q
    |||| ||||||| |||||||    
T  4159618 gccgaagaaacagtagcttt 4159599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 4130303 - 4130245
Alignment:
Q  227 aaatcagatgtatatagttttggtgtattactactagagattgtgagcggccgcagaaa 285  Q
    ||||||||||||||||| |||||||| ||| | ||||||||||| ||||| || |||||    
T  4130303 aaatcagatgtatatagctttggtgttttattgctagagattgtaagcggacgaagaaa 4130245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 20062459 - 20062383
Alignment:
Q  176 tgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgt 252  Q
    ||||||||||||||||||||||||||||| ||| |||| ||  ||||||  ||||||||||| | ||| ||||||||    
T  20062459 tgcagtggttatatgtctcctgaatacgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgt 20062383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 20231732 - 20231820
Alignment:
Q  182 ggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgt 270  Q
    ||||| |||||||||||||| || ||| ||||  || ||||||  ||||||||||| | ||| ||||||||||| ||||||||||||||    
T  20231732 ggttacatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgtattgctactagagattgt 20231820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 179 - 270
Target Start/End: Original strand, 20243801 - 20243892
Alignment:
Q  179 agtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgt 270  Q
    ||||| || |||||||||||||| || ||| ||||  || ||||||  ||||||||||| | ||| ||||||||||| ||||||||||||||    
T  20243801 agtggctacatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgtattgctactagagattgt 20243892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 20289420 - 20289512
Alignment:
Q  176 tgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagatt 268  Q
    |||||||||||||| ||||| |||||||| ||| |||| ||  ||||||  ||||||||||| | ||| |||||||| ||  |||||||||||    
T  20289420 tgcagtggttatatatctcccgaatacgcaatgcaaggactgttttcagagaaatcagatgtctttagctttggtgttttgttactagagatt 20289512  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 270
Target Start/End: Original strand, 20264188 - 20264279
Alignment:
Q  179 agtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgt 270  Q
    |||||||| |||||||| ||||| || ||| ||||  || ||||||  || |||||||| | ||| ||||||||||| ||||||||||||||    
T  20264188 agtggttacatgtctcccgaatatgcaatgcaaggattattttcagagaagtcagatgtttttagctttggtgtattgctactagagattgt 20264279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 20303867 - 20303946
Alignment:
Q  176 tgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtatt 255  Q
    |||||||| |||||||||||||||||||| |||  ||| ||  ||||||  ||||||||||| | ||| |||||||||||    
T  20303867 tgcagtggctatatgtctcctgaatacgcaatgcgaggacttttttcagagaaatcagatgtttttagctttggtgtatt 20303946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 176 - 270
Target Start/End: Original strand, 20285109 - 20285203
Alignment:
Q  176 tgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgt 270  Q
    |||||||| ||||||||||| ||||| || ||| ||||  || ||||||  ||||||||| | | |||||||||||| ||  |||||||||||||    
T  20285109 tgcagtggctatatgtctccggaatatgcaatgcaaggattattttcagagaaatcagatttttttagttttggtgttttgatactagagattgt 20285203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 176 - 270
Target Start/End: Original strand, 20294826 - 20294920
Alignment:
Q  176 tgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgt 270  Q
    |||||||| ||||||||||||||||| || ||| ||||  || ||||||  ||||||||||| | ||| |||||||| ||  | |||||||||||    
T  20294826 tgcagtggctatatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgttttgatgctagagattgt 20294920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 178 - 270
Target Start/End: Original strand, 1091432 - 1091524
Alignment:
Q  178 cagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgt 270  Q
    ||||||||||||| |||| |||||||| || || || ||| ||||    ||||| ||||||| ||| |||||||||||| |||||||||||||    
T  1091432 cagtggttatatggctccagaatacgccattgatggactattttctacaaaatctgatgtatttagctttggtgtattattactagagattgt 1091524  T

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