View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16006_low_62 (Length: 273)
Name: NF16006_low_62
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_62 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 257
Target Start/End: Original strand, 26720491 - 26720742
Alignment:
| Q |
6 |
cacagatcgtaaaatgctcctttccttcaaactctttccatcattcatccttctttcttcttcttggaaaagaaaaatcttaatccttctatgtggtcan |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
26720491 |
cacagatcgtaaaatgctcctttccttcaaactctttccatcattcatccttctttcttcttcttggaaaagaaaaatcttaatccttctttgttgtcat |
26720590 |
T |
|
| Q |
106 |
nnnnnnccccttctcaatttcccaatccacgtttccttcccatctactttctctgatacccaaatgcgaatgtgaaaccgaatgtgaattcggagaagct |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26720591 |
ttttttccccttctcaatttcccaatccacgtttccttcccatctactttctctgatacccaaatgcgaatgtgaagccgaatgtgaattcggagaagct |
26720690 |
T |
|
| Q |
206 |
ttctgatcttctgaacattgcggaggtggagacagatgtggaggcggagaag |
257 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26720691 |
ttctgatcttttgaacattgcggaggtggagacagatgtggaggcggagaag |
26720742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 6 - 257
Target Start/End: Complemental strand, 52529023 - 52528749
Alignment:
| Q |
6 |
cacagatcgtaaaatgctcctttccttcaaactctttccatcattcatccttct------ttcttcttcttggaaaagaaaaatcttaatccttctatgt |
99 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||| ||||||||||||| |||| | | |
|
|
| T |
52529023 |
cacagatcctaaaatgctcctttccttgaaaccctttccatcattcatccttctctcttcttcttcttcttcaaaaaaaaaaatcttaatcattctctat |
52528924 |
T |
|
| Q |
100 |
ggtcannnnnnnccccttctcaatttcccaatccacgtttccttcccatctactttctctgatacccaaatgcgaatgtgaaacc--------------- |
184 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
52528923 |
tgtcatttttt-ccccttctcaatttcccaatccacgtttccttcccatctactctctctggtacccaaatgcgaatgtgaaaccgaatcaaatctcgaa |
52528825 |
T |
|
| Q |
185 |
---gaatgtgaattcggagaagctttctgatcttctgaacattgcggaggtggagacagatgtggaggcggagaag |
257 |
Q |
| |
|
||||||||| | |||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||||| |
|
|
| T |
52528824 |
accgaatgtgaaattggagaagctttccgatcttctgaacatggcggaggtggagacaggtgcggaggcggagaag |
52528749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 52525622 - 52525562
Alignment:
| Q |
197 |
ggagaagctttctgatcttctgaacattgcggaggtggagacagatgtggaggcggagaag |
257 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||| | |||||||||||| |
|
|
| T |
52525622 |
ggagaagctttccgatcttctgaacatggcggaggtggagacagaagctgaggcggagaag |
52525562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 6 - 254
Target Start/End: Complemental strand, 45118400 - 45118150
Alignment:
| Q |
6 |
cacagatcgtaaaatgctcctttccttcaaactctttccatcattcatccttctttcttcttcttggaaaagaaaaat--cttaatccttctatgtggtc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| | |||| ||||| || ||||||||| | | ||| |
|
|
| T |
45118400 |
cacagatcgtaaaatgctcctttccttcaaaccctttccatcattcatccttcctttttcttcctcaaaaaaaaaaaaaactcaatccttctctattgtc |
45118301 |
T |
|
| Q |
104 |
annnnnnnccccttctcaatttcccaatccacgtttccttcccatctactttctctgatacccaaatgcgaatgtgaaaccgaatgtgaattcggagaag |
203 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45118300 |
acttttttccccttctcaatttcccaatccacgtttccttcccatctactttatctgatacccaaatgcgaatgtgaaaccgaatgtgaattcggagaag |
45118201 |
T |
|
| Q |
204 |
ctttctgatcttctgaacattgcggaggtggagacagatgtggaggcggag |
254 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45118200 |
ctttctaatcttctgaacattgcggaggtggagacagatgtggaggcggag |
45118150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 6 - 257
Target Start/End: Original strand, 2985635 - 2985890
Alignment:
| Q |
6 |
cacagatcgtaaaatgctcctttccttcaaactctttccatcattcatccttctttcttcttcttggaaaagaaaaat----cttaatccttctatgtgg |
101 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| ||||| || ||||||||| | | | |
|
|
| T |
2985635 |
cacaaatcgtaaaatgctcctttccttcaaactctttccatcattcatccttcttttttcttcctcaaaaaaaaaaaaaaaactcaatccttctctattg |
2985734 |
T |
|
| Q |
102 |
tcannnnnnnccccttctcaatttcccaatccacgtttccttcccatctactttctctgatacccaaatgcgaatgtgaaaccgaatgtgaattcggaga |
201 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2985735 |
tcacttttttccccttctcaatttcccaatccatgtttccttcccatctactttatctgatacccaaatgcgaatgtgaaaccgaatgtgaattcggaga |
2985834 |
T |
|
| Q |
202 |
agctttctgatcttctgaacattgcggaggtggagacagatgtggaggcggagaag |
257 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2985835 |
agctttctaatcttctgaacattgcggaggtggagacagatgtggaggcggagaag |
2985890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 6 - 188
Target Start/End: Complemental strand, 13863719 - 13863532
Alignment:
| Q |
6 |
cacagatcgtaaaatgctcctttccttcaaactctttccatcattcatccttctttcttcttcttggaaaagaaaaa-----tcttaatccttctatgtg |
100 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||| | |
|
|
| T |
13863719 |
cacagatcgtaaaatactcctttccttgaaaccctttccatcattcatccttctttcttcttcttcaaaaaaaaaaaaaaaatcttaatcattctcaatt |
13863620 |
T |
|
| Q |
101 |
gtcannnnnnnccccttctcaatttcccaatccacgtttccttcccatctactttctctgatacccaaatgcgaatgtgaaaccgaat |
188 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
13863619 |
gtcatttttttccccttctcaatttcccaatccacgtttccttcccatctactctctctggtacccaaatgcgaatgtgaaaccgaat |
13863532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 13863505 - 13863465
Alignment:
| Q |
197 |
ggagaagctttctgatcttctgaacattgcggaggtggaga |
237 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
13863505 |
ggagaagctttccgatcttctgaacatggcggaggcggaga |
13863465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 37978803 - 37978880
Alignment:
| Q |
180 |
aaaccgaatgtgaattcggagaagctttctgatcttctgaacattgcggaggtggagacagatgtggaggcggagaag |
257 |
Q |
| |
|
|||| |||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
37978803 |
aaactgaatgtaaaatcggagaagctttccgatcttctgaacatggcggaggtggagacagatgcggaggcggagaag |
37978880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 23073307 - 23073266
Alignment:
| Q |
112 |
ccccttctcaatttcccaatccacgtttccttcccatctact |
153 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
23073307 |
ccccttctcaatttccccatacacgtttccttcccatctact |
23073266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University