View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_65 (Length: 268)
Name: NF16006_low_65
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 35275423 - 35275660
Alignment:
| Q |
12 |
agaagcaaagggtgctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatg |
111 |
Q |
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| T |
35275423 |
agaatcaaagggtgctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatg |
35275522 |
T |
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| Q |
112 |
cgatttctgaaaaattgacactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacctttgtttctaaacatggtag |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| |
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| T |
35275523 |
cgatttctgaaaaattgacactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacttttgttttgaaacattctag |
35275622 |
T |
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| Q |
212 |
tgagtgtggataggtcagaagatggtcctggaatttgg |
249 |
Q |
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| T |
35275623 |
tgagtgtcgataggtcagaagatggtccagggatttgg |
35275660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 22 - 249
Target Start/End: Original strand, 35289545 - 35289772
Alignment:
| Q |
22 |
ggtgctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctga |
121 |
Q |
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| T |
35289545 |
ggtgccaaatttatgtcaccaccagaagtaggacaatttgattttcttaaggttgcaaagtttgtgtcaatgttggtttcgttgtatatacgagttctga |
35289644 |
T |
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| Q |
122 |
aaaattgacactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtgga |
221 |
Q |
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| T |
35289645 |
aaaattgacattctgcttgacctatggtgtgtgcaccagaaaggacagtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtgga |
35289744 |
T |
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| Q |
222 |
taggtcagaagatggtcctggaatttgg |
249 |
Q |
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| T |
35289745 |
taggtcagaagatggtcctggaatttgg |
35289772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 63 - 237
Target Start/End: Original strand, 35280241 - 35280415
Alignment:
| Q |
63 |
ttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaattgacactcagtttgccctatggtgtgtgcaccagat |
162 |
Q |
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| T |
35280241 |
ttttcttaaggttgcaaagtttgtgtcgatgttggtttcattgtatatgcgatttcggaaaaattgacattctgcttggcctatggtgtgtgcaccagaa |
35280340 |
T |
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| Q |
163 |
aggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtggataggtcagaagatggt |
237 |
Q |
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| T |
35280341 |
aggactgtaaggtctcttaatgttagacctttgttttgaaacattttagtgagtgtggataggtcagaagctggt |
35280415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 35307343 - 35307558
Alignment:
| Q |
22 |
ggtgctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctga |
121 |
Q |
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|||||||||||||||||||||||||| ||| |||||| ||| |||||||| || |||||| |||||||||||| |||||||| |||||||||||||| |
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| T |
35307343 |
ggtgctaaattggtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctga |
35307442 |
T |
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| Q |
122 |
aaaattgacactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtgga |
221 |
Q |
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||||||| ||||| ||| |||||||||||||||||||| || ||||| |||||| || |||||||| ||| | |||||| |||||||| ||||| |
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| T |
35307443 |
aaaattggcactctccttggcctatggtgtgtgcaccagaaagtactgtgaggtcacttgcagttagacccttggctgaaaacattgtagtgagagtgga |
35307542 |
T |
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| Q |
222 |
taggtcagaagatggt |
237 |
Q |
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| T |
35307543 |
aaggtcagaaaatggt |
35307558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 35322344 - 35322559
Alignment:
| Q |
22 |
ggtgctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctga |
121 |
Q |
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|||||||||||||||||||||||||| ||| |||||| ||| |||||||| || |||||| |||||||||||| |||||||| |||||||||||||| |
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| T |
35322344 |
ggtgctaaattggtgtcaccaccagaaagaggacaatttaatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctga |
35322443 |
T |
|
| Q |
122 |
aaaattgacactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtgga |
221 |
Q |
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||||||| ||||| ||| |||||||||||||||||||| || ||||| |||||| || |||||||| |||| | ||||||| | ||||| ||||| |
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| T |
35322444 |
aaaattggcactctccttggcctatggtgtgtgcaccagaaagtactgtgaggtcacttgcagttagacccttgtctgtaaacattttggtgagagtgga |
35322543 |
T |
|
| Q |
222 |
taggtcagaagatggt |
237 |
Q |
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||||||||| ||||| |
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| T |
35322544 |
aaggtcagaaaatggt |
35322559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 63 - 170
Target Start/End: Original strand, 35311730 - 35311837
Alignment:
| Q |
63 |
ttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaattgacactcagtttgccctatggtgtgtgcaccagat |
162 |
Q |
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|||||||||||| || |||||| |||||||||||| |||||||| ||||||| ||||||| ||| ||||||| ||| |||||||||||||||||||| |
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| T |
35311730 |
ttttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctgaacaatcgacactctccttggcctatggtgtgtgcaccagaa |
35311829 |
T |
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| Q |
163 |
aggactgt |
170 |
Q |
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| T |
35311830 |
agtactgt |
35311837 |
T |
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