View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_69 (Length: 259)
Name: NF16006_low_69
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_69 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 13879740 - 13879965
Alignment:
| Q |
17 |
taggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaatgcaggcacggcggacatgaaagagtggtaagaggaagaaagga |
116 |
Q |
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| T |
13879740 |
taggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaatgcaggcacggcggacatgaaagagtggtaagaggaagaaagga |
13879839 |
T |
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| Q |
117 |
ggcgggaaaatgccattgtgttgacagttgacagagtgagattttcttgggattgctttctctctttatcgcttgcttttagggtttttgtagtgaaaaa |
216 |
Q |
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| T |
13879840 |
ggcgggaaaatgccattgtgttaacagttgac--agtgagattttcttgggattgctttctctctttatcgcttgcttttagggtttttgtagtgaaaaa |
13879937 |
T |
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| Q |
217 |
tggcttaagaatgttctagaaggatact |
244 |
Q |
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| T |
13879938 |
tggctttagaatgttctagaaggatact |
13879965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 13875517 - 13875640
Alignment:
| Q |
17 |
taggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaatgcaggcacggcggacatgaaagagtggtaagaggaagaaagga |
116 |
Q |
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| T |
13875517 |
taggagatggctacgagtgacatggcggcagtagcgacggggtggcggcgaatgagtgaaggcacggcggccatgaatgagcggtagcaggaagagagga |
13875616 |
T |
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| Q |
117 |
ggcgggaaaatgccattgtgttga |
140 |
Q |
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| T |
13875617 |
ggcgggaaaatgccattgtgttga |
13875640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Original strand, 13875730 - 13875760
Alignment:
| Q |
214 |
aaatggcttaagaatgttctagaaggatact |
244 |
Q |
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| T |
13875730 |
aaatggcttaagaatgttctagaaggatact |
13875760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 13885720 - 13885756
Alignment:
| Q |
104 |
gaggaagaaaggaggcgggaaaatgccattgtgttga |
140 |
Q |
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| T |
13885720 |
gaggaagagaggaagcgggaaaatgccattgtgttga |
13885756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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