View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16006_low_72 (Length: 254)

Name: NF16006_low_72
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16006_low_72
NF16006_low_72
[»] chr3 (2 HSPs)
chr3 (19-254)||(49201528-49201763)
chr3 (117-254)||(49206587-49206726)
[»] scaffold0102 (1 HSPs)
scaffold0102 (62-100)||(14371-14410)
[»] chr8 (1 HSPs)
chr8 (62-100)||(35049084-35049123)
[»] chr5 (5 HSPs)
chr5 (62-100)||(5708173-5708212)
chr5 (62-100)||(8933893-8933932)
chr5 (62-100)||(9821439-9821478)
chr5 (62-100)||(14196578-14196617)
chr5 (68-97)||(19967118-19967147)
[»] chr2 (2 HSPs)
chr2 (62-100)||(5375600-5375639)
chr2 (71-100)||(43323771-43323800)
[»] chr1 (2 HSPs)
chr1 (62-100)||(25275142-25275181)
chr1 (177-236)||(37029859-37029918)
[»] chr7 (1 HSPs)
chr7 (71-100)||(18264571-18264600)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 49201528 - 49201763
Alignment:
Q  19 aataaccacaatgtgatgtaatcatatggatctcatggatcatattaacaaattttttgtttgatggatggattggatggatcatatcattgatgttagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49201528 aataaccacaatgtgatgtaatcatatggatctcatggatcatattaacaaattttttgtttgatggatggattggatggatcatatcattgatgttagt 49201627  T
Q  119 ccctgtcaagagttttgttttaaacaccaaaagtgcattcnnnnnnntaccatgcatgtaaaaatgtaaattaaattgtcatataacataatagtttgaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49201628 ccctgtcaagagttttgttttaaacaccaaaagtgcattcaaaaaaataccatgcatgtaaaaatgtaaattaaattgtcatataacataatagtttgaa 49201727  T
Q  219 cctaaaactaataaaagactggtgaatcaaacacat 254  Q
    ||||||||||||||||||||||||||||||||||||    
T  49201728 cctaaaactaataaaagactggtgaatcaaacacat 49201763  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 254
Target Start/End: Original strand, 49206587 - 49206726
Alignment:
Q  117 gtccctgtcaagagttttgttttaaacaccaaaagtgcattcnnnnnnntaccatgcatgtaaaaatgtaaattaaattgtcatataacataatagt--- 213  Q
    ||||||||||  ||||||||||||||| |||||| | |||||       ||||| ||||||||||||||||| |||||  |||||| ||||| ||||       
T  49206587 gtccctgtcagaagttttgttttaaacgccaaaattccattcaaaaaa-taccaagcatgtaaaaatgtaaactaaatcatcatatgacatagtagtagt 49206685  T
Q  214 ttgaacctaaaactaataaaagactggtgaatcaaacacat 254  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  49206686 ttgaacctaaaactaataaaagactggtgaataaaacacat 49206726  T

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Target: scaffold0102 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 14371 - 14410
Alignment:
Q  62 attaacaaatttt-ttgtttgatggatggattggatggat 100  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  14371 attaacaaatttttttgtttgatggatggattggatggat 14410  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 35049084 - 35049123
Alignment:
Q  62 attaacaaatttt-ttgtttgatggatggattggatggat 100  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  35049084 attaacaaatttttttgtttgatggatggattggatggat 35049123  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 5708212 - 5708173
Alignment:
Q  62 attaacaaatttttt-gtttgatggatggattggatggat 100  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  5708212 attaacaaatttttttgtttgatggatggattggatggat 5708173  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 8933893 - 8933932
Alignment:
Q  62 attaacaaatttt-ttgtttgatggatggattggatggat 100  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  8933893 attaacaaatttttttgtttgatggatggattggatggat 8933932  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 9821478 - 9821439
Alignment:
Q  62 attaacaaatt-ttttgtttgatggatggattggatggat 100  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  9821478 attaacaaattattttgtttgatggatggattggatggat 9821439  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 14196617 - 14196578
Alignment:
Q  62 attaacaaat-tttttgtttgatggatggattggatggat 100  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  14196617 attaacaaatatttttgtttgatggatggattggatggat 14196578  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 97
Target Start/End: Original strand, 19967118 - 19967147
Alignment:
Q  68 aaattttttgtttgatggatggattggatg 97  Q
    ||||||||||||||||||||||||||||||    
T  19967118 aaattttttgtttgatggatggattggatg 19967147  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 5375639 - 5375600
Alignment:
Q  62 attaacaaatttttt-gtttgatggatggattggatggat 100  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  5375639 attaacaaatttttttgtttgatggatggattggatggat 5375600  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 100
Target Start/End: Complemental strand, 43323800 - 43323771
Alignment:
Q  71 ttttttgtttgatggatggattggatggat 100  Q
    ||||||||||||||||||||||||||||||    
T  43323800 ttttttgtttgatggatggattggatggat 43323771  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 25275181 - 25275142
Alignment:
Q  62 attaacaaatttttt-gtttgatggatggattggatggat 100  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  25275181 attaacaaatttttttgtttgatggatggattggatggat 25275142  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 37029859 - 37029918
Alignment:
Q  177 taaaaatgtaaattaaattgtcatataacataatagtttgaacctaaaactaataaaaga 236  Q
    ||||||||||||||||||  |||||| | |||| ||||| |||| |||||||||||||||    
T  37029859 taaaaatgtaaattaaatcatcatatgatataagagtttaaacccaaaactaataaaaga 37029918  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 100
Target Start/End: Original strand, 18264571 - 18264600
Alignment:
Q  71 ttttttgtttgatggatggattggatggat 100  Q
    ||||||||||||||||||||||||||||||    
T  18264571 ttttttgtttgatggatggattggatggat 18264600  T

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