View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_75 (Length: 252)
Name: NF16006_low_75
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_75 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 32899788 - 32899995
Alignment:
| Q |
27 |
tcccgtatttattag--tcttactcaaaaactatatatacaagctagagatataaggttagtatataagactactagactattaattgtattgtacaaat |
124 |
Q |
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| T |
32899788 |
tcccgtatttattagagtcttactcaaaaactatatatacaagctagagatataaggttagtatataagactactagactattaattgtattgtacaaat |
32899887 |
T |
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| Q |
125 |
ttgactaacggtttgtgtagacaggtagaaagcttatcaataaatttgaagcatccatttagaaacgatattaaacatcttactcttacccctctctctc |
224 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32899888 |
ttgactaacggtttgtgtaggcaggtagaaagcttatcaataaatttgaagcatccatttagaaacgatattaaacgtcttactcttacccctctctctc |
32899987 |
T |
|
| Q |
225 |
atgtcttc |
232 |
Q |
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|||||||| |
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| T |
32899988 |
atgtcttc |
32899995 |
T |
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