View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_76 (Length: 250)
Name: NF16006_low_76
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_76 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 42205604 - 42205815
Alignment:
| Q |
20 |
agttcttcataaataattttggatggctagggagggacctatgattactatagcttattgattagattttcattatgtcaataaatcatgtttatggttc |
119 |
Q |
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| T |
42205604 |
agttcttcataaataattttggatggctagggagggatctatgattgctatagcttattgattagattttcattatgtcaataaatcatgtttatggttc |
42205703 |
T |
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| Q |
120 |
aatcaatttgcattattattattggtgattcaaaagtccaattgatgtacatcgaatttaacacttgctgactctaatgcacgtgtgccatgcattaagg |
219 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205704 |
aatcaatttgc---attattattggtgattcaaaagtccaattgatgtacatcgaatttaacacttgctgactctaatgcacgtgtgccatgcattaagg |
42205800 |
T |
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| Q |
220 |
acaaaagttcctatg |
234 |
Q |
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||||||||||||||| |
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| T |
42205801 |
acaaaagttcctatg |
42205815 |
T |
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