View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16006_low_79 (Length: 250)

Name: NF16006_low_79
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16006_low_79
NF16006_low_79
[»] chr3 (7 HSPs)
chr3 (1-199)||(10544296-10544494)
chr3 (66-132)||(19585643-19585709)
chr3 (66-138)||(12297676-12297748)
chr3 (14-137)||(37193286-37193409)
chr3 (77-123)||(44667453-44667499)
chr3 (210-241)||(10544249-10544280)
chr3 (76-132)||(18433130-18433186)
[»] scaffold0329 (1 HSPs)
scaffold0329 (66-132)||(12291-12357)
[»] chr8 (4 HSPs)
chr8 (71-137)||(2997712-2997778)
chr8 (71-134)||(20077753-20077816)
chr8 (69-132)||(25574806-25574869)
chr8 (71-123)||(18551539-18551591)
[»] chr1 (3 HSPs)
chr1 (66-132)||(52778962-52779028)
chr1 (71-134)||(14456838-14456901)
chr1 (85-133)||(9796045-9796093)
[»] chr6 (6 HSPs)
chr6 (14-137)||(34825006-34825129)
chr6 (71-137)||(33460849-33460915)
chr6 (76-138)||(21752792-21752854)
chr6 (76-138)||(33580680-33580742)
chr6 (86-116)||(6343502-6343532)
chr6 (83-132)||(26134600-26134649)
[»] chr5 (7 HSPs)
chr5 (66-135)||(17387965-17388034)
chr5 (83-176)||(9845911-9846004)
chr5 (68-126)||(15449982-15450040)
chr5 (86-116)||(16989791-16989821)
chr5 (83-120)||(23954103-23954140)
chr5 (76-132)||(31327667-31327723)
chr5 (76-132)||(31376334-31376390)
[»] chr4 (4 HSPs)
chr4 (66-135)||(22644641-22644710)
chr4 (85-126)||(14040099-14040140)
chr4 (85-127)||(8122137-8122179)
chr4 (89-127)||(19803306-19803344)
[»] chr2 (7 HSPs)
chr2 (69-132)||(18498778-18498841)
chr2 (69-132)||(26360449-26360512)
chr2 (66-135)||(29500650-29500719)
chr2 (86-116)||(20482626-20482656)
chr2 (86-116)||(28018531-28018561)
chr2 (76-132)||(30154844-30154900)
chr2 (80-128)||(37177582-37177630)
[»] scaffold1416 (1 HSPs)
scaffold1416 (86-116)||(199-229)
[»] chr7 (1 HSPs)
chr7 (83-132)||(16257678-16257727)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 10544494 - 10544296
Alignment:
Q  1 atagagacccttctgtaatttgctaacagtgtttggagcactatcaacaccatcagggatactcctatatacattttcttgcaaatctccatgaaggaaa 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||    
T  10544494 atagagactcttctgtaatttgctaacagtgtttggagcactatcaacactatcagggatactcttgtatacattttcttgcaaatctccatgaaggaaa 10544395  T
Q  101 gcattgtttacatctaattgatgtaaatgccagttttgggtggatgcaagagccaatagaattctgattgtggttaactttgcaacaagagaaaaactg 199  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10544394 gcattgtttacatctaattgatataaatgccagttttgggtgaatgcaagagccaatagaattctgattgtggttaactttgcaacaggagaaaaactg 10544296  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 19585643 - 19585709
Alignment:
Q  66 tatatacattttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgcca 132  Q
    |||| |||| |||||| |||||||||||||||||||||||||||||||| | |||||||||||||||    
T  19585643 tataaacatcttcttgtaaatctccatgaaggaaagcattgtttacatcaagttgatgtaaatgcca 19585709  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 12297748 - 12297676
Alignment:
Q  66 tatatacattttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgccagttttg 138  Q
    |||| |||| |||||| |||||||||||||| ||||||||| ||||||| | ||||||||||||||| |||||    
T  12297748 tataaacatcttcttgtaaatctccatgaagaaaagcattgcttacatcaagttgatgtaaatgccaattttg 12297676  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 37193409 - 37193286
Alignment:
Q  14 tgtaatttgctaacagtgtttggagcactatcaacaccatcagggatactcctatatacattttcttgcaaatctccatgaaggaaagcattgtttacat 113  Q
    |||||||||| |||  ||||||| ||||||   ||||| || || ||| || | || ||||| ||||||||||| ||||| || |||||||| |||||||    
T  37193409 tgtaatttgcaaaccttgtttggtgcactagagacaccttctggtatattcatgtaaacattctcttgcaaatcaccatgtagaaaagcattatttacat 37193310  T
Q  114 ctaattgatgtaaatgccagtttt 137  Q
    | || |||||||||||||||||||    
T  37193309 ccaactgatgtaaatgccagtttt 37193286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 44667453 - 44667499
Alignment:
Q  77 tcttgcaaatctccatgaaggaaagcattgtttacatctaattgatg 123  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||    
T  44667453 tcttgcaattctccatgaaggaaagcatttttaacatctaattgatg 44667499  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 210 - 241
Target Start/End: Complemental strand, 10544280 - 10544249
Alignment:
Q  210 tcaagaccttcaacttgattatatccctttgc 241  Q
    ||||||||||||||||||||||||||||||||    
T  10544280 tcaagaccttcaacttgattatatccctttgc 10544249  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 18433130 - 18433186
Alignment:
Q  76 ttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgcca 132  Q
    |||||| || |||||||| |  || ||||| ||||||||||||||||||||||||||    
T  18433130 ttcttgtaattctccatgcaaaaacgcattatttacatctaattgatgtaaatgcca 18433186  T

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Target: scaffold0329 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 12357 - 12291
Alignment:
Q  66 tatatacattttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgcca 132  Q
    |||| |||| |||||| |||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  12357 tataaacatcttcttgtaaatctccatgaagaaaagcattgtttacatcaagttgatgtaaatgcca 12291  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 2997778 - 2997712
Alignment:
Q  71 acattttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgccagtttt 137  Q
    ||||| ||||||||||| ||||| || ||||||||||||||||| || |||||||||||||||||||    
T  2997778 acattctcttgcaaatcaccatgtagaaaagcattgtttacatccaactgatgtaaatgccagtttt 2997712  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 20077816 - 20077753
Alignment:
Q  71 acattttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgccagt 134  Q
    |||| ||| ||||||||| ||||||| || ||||||||||||||||| ||||||||||||||||    
T  20077816 acatcttcctgcaaatcttcatgaagaaatgcattgtttacatctaactgatgtaaatgccagt 20077753  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 25574806 - 25574869
Alignment:
Q  69 atacattttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgcca 132  Q
    |||||| ||||||||||||||||||||| || ||||| || ||||| | |||||||||||||||    
T  25574806 atacatcttcttgcaaatctccatgaagaaatgcattattcacatcaagttgatgtaaatgcca 25574869  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 18551539 - 18551591
Alignment:
Q  71 acattttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatg 123  Q
    |||||||||||||| || ||||||||||||||||| || ||||| | ||||||    
T  18551539 acattttcttgcaattcaccatgaaggaaagcattattgacatcaagttgatg 18551591  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 52779028 - 52778962
Alignment:
Q  66 tatatacattttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgcca 132  Q
    |||| |||| |||||| |||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  52779028 tataaacatcttcttgtaaatctccatgaagaaaagcattgtttacatcaagttgatgtaaatgcca 52778962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 14456901 - 14456838
Alignment:
Q  71 acattttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgccagt 134  Q
    |||| ||||||||  |||||||| || ||||||||||||||||| |  ||||||||||||||||    
T  14456901 acatcttcttgcagttctccatggagaaaagcattgtttacatcaagctgatgtaaatgccagt 14456838  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 9796045 - 9796093
Alignment:
Q  85 atctccatgaaggaaagcattgtttacatctaattgatgtaaatgccag 133  Q
    ||||||||| | ||||||| | |||||||||||||||||||||| ||||    
T  9796045 atctccatgtaagaaagcaatatttacatctaattgatgtaaattccag 9796093  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 34825129 - 34825006
Alignment:
Q  14 tgtaatttgctaacagtgtttggagcactatcaacaccatcagggatactcctatatacattttcttgcaaatctccatgaaggaaagcattgtttacat 113  Q
    |||||||||| |||  ||||||| ||||||   ||||| || || ||| || | || ||||| ||||||||||| ||||| || |||||||| |||||||    
T  34825129 tgtaatttgcaaaccttgtttggtgcactagagacaccttctggtatattcatgtaaacattctcttgcaaatcaccatgtagaaaagcattatttacat 34825030  T
Q  114 ctaattgatgtaaatgccagtttt 137  Q
    | || |||||||||||||||||||    
T  34825029 ccaactgatgtaaatgccagtttt 34825006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 33460915 - 33460849
Alignment:
Q  71 acattttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgccagtttt 137  Q
    ||||| ||||||||||| ||||| || |||||||| |||||||| || |||||||||||||||||||    
T  33460915 acattctcttgcaaatcaccatgtagaaaagcattatttacatccaactgatgtaaatgccagtttt 33460849  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 21752792 - 21752854
Alignment:
Q  76 ttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgccagttttg 138  Q
    ||||| |||||| ||||| |  || ||||||| ||||||||||||||||||||||||||||||    
T  21752792 ttcttccaaatcaccatgcaaaaatgcattgtgtacatctaattgatgtaaatgccagttttg 21752854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 33580742 - 33580680
Alignment:
Q  76 ttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgccagttttg 138  Q
    ||||| |||||| ||||| |  || ||||||| ||||||||||||||||||||||||||||||    
T  33580742 ttcttccaaatcaccatgcaaaaatgcattgtgtacatctaattgatgtaaatgccagttttg 33580680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 116
Target Start/End: Complemental strand, 6343532 - 6343502
Alignment:
Q  86 tctccatgaaggaaagcattgtttacatcta 116  Q
    |||||||||||||||||||||||||||||||    
T  6343532 tctccatgaaggaaagcattgtttacatcta 6343502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 26134649 - 26134600
Alignment:
Q  83 aaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgcca 132  Q
    ||||||||||| || ||||||||||| ||||||||||| |||| ||||||    
T  26134649 aaatctccatggagaaaagcattgttcacatctaattggtgtagatgcca 26134600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 17388034 - 17387965
Alignment:
Q  66 tatatacattttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgccagtt 135  Q
    ||||||||| |||||| | ||||||||| |  || |||||||||||||||||||||||||||| ||||||    
T  17388034 tatatacatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaaattccagtt 17387965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 176
Target Start/End: Original strand, 9845911 - 9846004
Alignment:
Q  83 aaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgccagttttgggtggatgcaagagccaatagaattctgattgtggtta 176  Q
    ||||||||||| || || ||||| ||||||||||||||||||| |||||| || | | |||| || |||||||| |  | ||||||||||||||    
T  9845911 aaatctccatgcagaaaggcattatttacatctaattgatgtagatgccaattattgatggaagctagagccaaaattaatctgattgtggtta 9846004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 15450040 - 15449982
Alignment:
Q  68 tatacattttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaa 126  Q
    |||||||  ||||||| ||| |||||||||||||||||||| ||||| | |||||||||    
T  15450040 tatacatcctcttgcagatcaccatgaaggaaagcattgttcacatcaagttgatgtaa 15449982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 116
Target Start/End: Original strand, 16989791 - 16989821
Alignment:
Q  86 tctccatgaaggaaagcattgtttacatcta 116  Q
    |||||||||||||||||||||||||||||||    
T  16989791 tctccatgaaggaaagcattgtttacatcta 16989821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 23954103 - 23954140
Alignment:
Q  83 aaatctccatgaaggaaagcattgtttacatctaattg 120  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  23954103 aaatcaccatgaaggaaagcattgttaacatctaattg 23954140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 31327667 - 31327723
Alignment:
Q  76 ttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgcca 132  Q
    ||||||||| ||||||||||| || |||||||||||||| | |||||| | ||||||    
T  31327667 ttcttgcaattctccatgaagaaatgcattgtttacatcaagttgatgcatatgcca 31327723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 31376334 - 31376390
Alignment:
Q  76 ttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgcca 132  Q
    ||||||||| ||||||||||| || |||||||||||||| | |||||| | ||||||    
T  31376334 ttcttgcaattctccatgaagaaatgcattgtttacatcaagttgatgcatatgcca 31376390  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 22644710 - 22644641
Alignment:
Q  66 tatatacattttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgccagtt 135  Q
    |||| |||| |||||| || |||||||| ||||||||||| || |||||||| |||||||||||||||||    
T  22644710 tatagacatcttcttgtaattctccatggaggaaagcattattgacatctaactgatgtaaatgccagtt 22644641  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 14040140 - 14040099
Alignment:
Q  85 atctccatgaaggaaagcattgtttacatctaattgatgtaa 126  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  14040140 atctccatgaagaaatgcattgtttacatctaattgatgtaa 14040099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 8122137 - 8122179
Alignment:
Q  85 atctccatgaaggaaagcattgtttacatctaattgatgtaaa 127  Q
    |||||||||||| || |||||||||||||| ||||||||||||    
T  8122137 atctccatgaagaaaggcattgtttacatccaattgatgtaaa 8122179  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 19803306 - 19803344
Alignment:
Q  89 ccatgaaggaaagcattgtttacatctaattgatgtaaa 127  Q
    |||||||| || |||||||||||||||||||||||||||    
T  19803306 ccatgaagaaaggcattgtttacatctaattgatgtaaa 19803344  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 18498778 - 18498841
Alignment:
Q  69 atacattttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgcca 132  Q
    |||||| ||||||||||||||||||||| || ||||| || ||||| | |||||||||||||||    
T  18498778 atacatcttcttgcaaatctccatgaagaaatgcattattcacatcaagttgatgtaaatgcca 18498841  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 26360449 - 26360512
Alignment:
Q  69 atacattttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgcca 132  Q
    |||||| ||||||||||||||||||||| || ||||| || ||||| | |||||||||||||||    
T  26360449 atacatcttcttgcaaatctccatgaagaaatgcattattcacatcaagttgatgtaaatgcca 26360512  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 29500719 - 29500650
Alignment:
Q  66 tatatacattttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgccagtt 135  Q
    |||| |||| ||| || ||||||| |||||||||||||||||| ||||| | ||||||||||| ||||||    
T  29500719 tataaacatcttcatgtaaatctctatgaaggaaagcattgttaacatcaagttgatgtaaattccagtt 29500650  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 116
Target Start/End: Original strand, 20482626 - 20482656
Alignment:
Q  86 tctccatgaaggaaagcattgtttacatcta 116  Q
    |||||||||||||||||||||||||||||||    
T  20482626 tctccatgaaggaaagcattgtttacatcta 20482656  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 116
Target Start/End: Complemental strand, 28018561 - 28018531
Alignment:
Q  86 tctccatgaaggaaagcattgtttacatcta 116  Q
    |||||||||||||||||||||||||||||||    
T  28018561 tctccatgaaggaaagcattgtttacatcta 28018531  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 30154900 - 30154844
Alignment:
Q  76 ttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgcca 132  Q
    |||||| || |||||||| |  || ||||| ||||||||||||||||||||||||||    
T  30154900 ttcttgtaattctccatgcaaaaacgcattatttacatctaattgatgtaaatgcca 30154844  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 37177630 - 37177582
Alignment:
Q  80 tgcaaatctccatgaaggaaagcattgtttacatctaattgatgtaaat 128  Q
    |||||||||||||| || || ||||| |||||||||| |||||||||||    
T  37177630 tgcaaatctccatggagaaaggcattatttacatctagttgatgtaaat 37177582  T

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Target: scaffold1416 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1416
Description:

Target: scaffold1416; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 116
Target Start/End: Original strand, 199 - 229
Alignment:
Q  86 tctccatgaaggaaagcattgtttacatcta 116  Q
    |||||||||||||||||||||||||||||||    
T  199 tctccatgaaggaaagcattgtttacatcta 229  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 16257727 - 16257678
Alignment:
Q  83 aaatctccatgaaggaaagcattgtttacatctaattgatgtaaatgcca 132  Q
    ||||||||||| || ||||||||||| ||||||||||| |||| ||||||    
T  16257727 aaatctccatggagaaaagcattgttcacatctaattggtgtagatgcca 16257678  T

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