View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_82 (Length: 249)
Name: NF16006_low_82
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_82 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 11119679 - 11119442
Alignment:
| Q |
1 |
gatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaagggtgtagtggcggatg |
100 |
Q |
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| T |
11119679 |
gatgttgaattgtatgttgaacctaaggtgaatttaggaaatggtataaatgttgctgattttatcggggaacgaaagggaaagggtgtagtggcggatg |
11119580 |
T |
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| Q |
101 |
aagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgacagtgaaga |
200 |
Q |
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| T |
11119579 |
aagttgaaggcaatgttggtgaagcagacaacgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgacagtgaaga |
11119480 |
T |
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| Q |
201 |
agagaggatggctggggttgatgataggtttgatgatg |
238 |
Q |
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| T |
11119479 |
agagaggatggctggggttgatgataggtttgatgatg |
11119442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 12206175 - 12205970
Alignment:
| Q |
14 |
atgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaa |
113 |
Q |
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| T |
12206175 |
atgttgaacctaaggtgaatttaggaaatgctataaatgttgctgatgttatcggggaacgaaagggaaagggtgtagtggcggattaagttgaaggcaa |
12206076 |
T |
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| Q |
114 |
tgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgacagtgaagaagagaggatggct |
213 |
Q |
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| T |
12206075 |
tgttggtgaagcagacagtgatgatgaagatgttagtagtgatgatggtgattcaattaaaggcgcacactttaatgatagtgaagaagagaggatggct |
12205976 |
T |
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| Q |
214 |
ggggtt |
219 |
Q |
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| T |
12205975 |
ggggtt |
12205970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 32741383 - 32741144
Alignment:
| Q |
1 |
gatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaagggtgtagtggcggatg |
100 |
Q |
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| T |
32741383 |
gatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataattgttgctgatgttattggggaacaaaagggaaagggtgtagtggcggatg |
32741284 |
T |
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| Q |
101 |
aagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgacagtgaaga |
200 |
Q |
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| T |
32741283 |
aaattgaaggcgatgttggtgaagtagacatcgatggtggagatgttagtagtgatgatggtgatttaattaaaggcacacgctttgatgatagtgaaga |
32741184 |
T |
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| Q |
201 |
agagaggatggctggggttgatgataggtttgatgatgtc |
240 |
Q |
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| T |
32741183 |
agagaagatggctgcggttgatgatgggtttgataatgtc |
32741144 |
T |
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