View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_84 (Length: 246)
Name: NF16006_low_84
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_84 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 7500886 - 7501101
Alignment:
| Q |
13 |
aatatccatcaacttatccttatatcaaacgacaagtatcttcaccnnnnnnngatgcaatttggatgacataggcctataaattcaagttacagatttg |
112 |
Q |
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| T |
7500886 |
aatatccatcaacttatccttatatcaaacgacaagtatcttcaccaaaaaaagatgcaatttggatgacataagcctataaattcaagttacagatttg |
7500985 |
T |
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| Q |
113 |
ccatagcccccaaaacagataatacgaattggggaagggattatcaagtgaaggaagagccagagaattgtgacgatttgatgcaaaattaatacaaata |
212 |
Q |
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| T |
7500986 |
ccatagcccccaaaacagataatacgaattggggaagggattatcaagtgaaggaagagccagagaattgtgacgatttgatgcaaaattaatacaaata |
7501085 |
T |
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| Q |
213 |
aatgaggcacatatct |
228 |
Q |
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|||||||||||||||| |
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| T |
7501086 |
aatgaggcacatatct |
7501101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 8142580 - 8142370
Alignment:
| Q |
13 |
aatatccatcaacttatccttatatcaaacgacaagtatcttcaccnnnnnnngatgcaatttggatgacataggcctataaattcaagttacagatttg |
112 |
Q |
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|||||||||||| ||||| ||||| |||| | |||||||||||||| ||||||||||| || ||||| ||||||| |||||||||||||||||| |
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| T |
8142580 |
aatatccatcaatttatctttataccaaatgtcaagtatcttcaccaaaaaaagatgcaatttgtattacatatgcctatagattcaagttacagatttg |
8142481 |
T |
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| Q |
113 |
ccatagcccccaaaacagataatacgaattggggaagggattatcaagtgaaggaagagccagagaattgtgacgatttgatgcaaaattaatacaaata |
212 |
Q |
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| T |
8142480 |
tcatagcctccaaagcagctaatatgaattggggaagggattatgagatgaaggatgggccagagtcttgtgtcgatttgatgcaaaatgaatataaata |
8142381 |
T |
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| Q |
213 |
aatgaggcaca |
223 |
Q |
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||||||||||| |
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| T |
8142380 |
aatgaggcaca |
8142370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 7498100 - 7498299
Alignment:
| Q |
15 |
tatccatcaacttatccttatatcaaacgacaagtatcttcaccnnnnnnngatgcaatttggatgacataggcctataaattcaagttacagatttgcc |
114 |
Q |
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|||||||||| ||||||||||| |||| | |||||||||| ||| ||||||||||| || ||||| |||||| ||| |||||||||||||| | |
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| T |
7498100 |
tatccatcaatttatccttataccaaatgccaagtatcttgaccaaaaaaagatgcaatttgaattacatatacctatagattaaagttacagatttgtc |
7498199 |
T |
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| Q |
115 |
atagcccccaaaacagataatacgaattggggaagggattatcaagtgaaggaagagccagagaattgtgacgatttgatgcaaaattaatacaaataaa |
214 |
Q |
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|||||| ||||| ||| |||| |||||||||||| |||||| | |||||||| |||||||||| |||||||||||||||||||||| |||| ||||||| |
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| T |
7498200 |
atagcctccaaagcagcaaatatgaattggggaagagattatgaggtgaaggatgagccagagacttgtgacgatttgatgcaaaatgaatataaataaa |
7498299 |
T |
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