View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16006_low_9 (Length: 610)
Name: NF16006_low_9
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_9 |
 | |
|
| [»] scaffold0483 (2 HSPs) |
| | |
|
| [»] scaffold0109 (2 HSPs) |
| | |
|
| [»] scaffold0018 (3 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 246 - 498
Target Start/End: Original strand, 14694093 - 14694345
Alignment:
| Q |
246 |
gattggaatattgctatgtctacccttattagtgacttctttcaacttttgtgcttgagacatatttcttggtttatccttcatgattttagtgtcttca |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |
|
|
| T |
14694093 |
gattggaatattgctatgtctacccttattagtgacttctttcaacttttgtgcttgagacatatttcttggtttatccttgatgatttttgtgccttca |
14694192 |
T |
|
| Q |
346 |
tgcaatttttgtgttttaatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatat |
445 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||| |
|
|
| T |
14694193 |
tgcaatttttgtgtttgaatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaataacaaaatgaacattttttatgtatat |
14694292 |
T |
|
| Q |
446 |
caatatacctgnnnnnnngaagtgaccgactcgtcacctctcctaatcccgtc |
498 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
14694293 |
caatatacctgtttttttgaagtgaccgactcgtcacccctcctaatcccgtc |
14694345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 14693865 - 14694048
Alignment:
| Q |
17 |
agacacctatttctgtattttcgaaaaactcatatatttgttctttggtaatttcttcatcatactgttcttcaccaaaaataccttcctccatagttat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14693865 |
agacacctatttctgtattttcgaaaaactcatacatctgttctttggtaatttcttcattatactgctcttcaccaaaaataccttcctccatagttac |
14693964 |
T |
|
| Q |
117 |
ctgacgcgtatctgagttttccatttgcacttccaccagtgatttaagagctgacatccatgatggacgacactttgtagagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14693965 |
ctgacgcgtatctgagttttccatttgcacttccaccaatgatttaagagctgacacccatgatggacgacactttgtagagtt |
14694048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0483 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: scaffold0483
Description:
Target: scaffold0483; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 246 - 499
Target Start/End: Original strand, 3494 - 3747
Alignment:
| Q |
246 |
gattggaatattgctatgtctacccttattagtgacttctttcaacttttgtgcttgagacatatttcttggtttatccttcatgattttagtgtcttca |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||| ||||| |
|
|
| T |
3494 |
gattggaatattgctatgtctacccttattagtgacttctttcaacttttgtgcttgagacatattccttggtttatccttgatgatttttgtgccttca |
3593 |
T |
|
| Q |
346 |
tgcaatttttgtgttttaatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatat |
445 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3594 |
tgcaatttttgtgtttgaatataaaatattaatggtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacattttttgtgtatat |
3693 |
T |
|
| Q |
446 |
caatatacctgnnnnnnngaagtgaccgactcgtcacctctcctaatcccgtca |
499 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3694 |
caatatacctgtttttttgaagtgaccgactcgtcacccctcctaatcccgtca |
3747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0483; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 3262 - 3448
Alignment:
| Q |
14 |
cagagacacctatttctgtattttcgaaaaactcatatatttgttctttggtaatttcttcatcatactgttcttcaccaaaaataccttcctccatagt |
113 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3262 |
cagagacacctatttctgtattttcgacaaattcatacatttgttctttggtaatttcctcattatactgctcttcaccaaaaataccttcctccatagt |
3361 |
T |
|
| Q |
114 |
tatctgacgcgtatctgagttttccatttgcacttccaccagtgatttaagagctgacatccatgatggacgacactttgtagagtt |
200 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| |||||||||||||| |
|
|
| T |
3362 |
tacctgacgtgtatctgagttttccatttgcacttccaccaatgatttaaaagctgacacccatgatggacggcactttgtagagtt |
3448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0109 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: scaffold0109
Description:
Target: scaffold0109; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 246 - 499
Target Start/End: Original strand, 48334 - 48587
Alignment:
| Q |
246 |
gattggaatattgctatgtctacccttattagtgacttctttcaacttttgtgcttgagacatatttcttggtttatccttcatgattttagtgtcttca |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||| ||||| |
|
|
| T |
48334 |
gattggaatattgctatgtctacccttattagtgacttctttcaacttttgtgcttgagacatattccttggtttatccttgatgatttttgtgccttca |
48433 |
T |
|
| Q |
346 |
tgcaatttttgtgttttaatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatat |
445 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48434 |
tgcaatttttgtgtttgaatataaaatattaatggtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacattttttgtgtatat |
48533 |
T |
|
| Q |
446 |
caatatacctgnnnnnnngaagtgaccgactcgtcacctctcctaatcccgtca |
499 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48534 |
caatatacctgtttttttgaagtgaccgactcgtcacccctcctaatcccgtca |
48587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0109; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 48102 - 48288
Alignment:
| Q |
14 |
cagagacacctatttctgtattttcgaaaaactcatatatttgttctttggtaatttcttcatcatactgttcttcaccaaaaataccttcctccatagt |
113 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48102 |
cagagacacctatttctgtattttcgacaaattcatacatttgttctttggtaatttcctcattatactgctcttcaccaaaaataccttcctccatagt |
48201 |
T |
|
| Q |
114 |
tatctgacgcgtatctgagttttccatttgcacttccaccagtgatttaagagctgacatccatgatggacgacactttgtagagtt |
200 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| |||||||||||||| |
|
|
| T |
48202 |
tacctgacgtgtatctgagttttccatttgcacttccaccaatgatttaaaagctgacacccatgatggacggcactttgtagagtt |
48288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 193; Significance: 1e-104; HSPs: 3)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 246 - 499
Target Start/End: Original strand, 125842 - 126095
Alignment:
| Q |
246 |
gattggaatattgctatgtctacccttattagtgacttctttcaacttttgtgcttgagacatatttcttggtttatccttcatgattttagtgtcttca |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |
|
|
| T |
125842 |
gattggaatattgctatgtctacccttattggtgacttctttcaacttttgtgcttgagacatatttcttggtttatcctggatgatttttgtgccttca |
125941 |
T |
|
| Q |
346 |
tgcaatttttgtgttttaatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatat |
445 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
125942 |
tgcaatttttgtgtttgaatctaaaatattaattgtatagttaatttagttaattattaacaaatgattgaatagcaaaatgaacattttttgtgtatat |
126041 |
T |
|
| Q |
446 |
caatatacctgnnnnnnngaagtgaccgactcgtcacctctcctaatcccgtca |
499 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
126042 |
caatatacctgttttttttaagtgaccgactcgtcacccctcctaatcccgtca |
126095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 125704 - 125796
Alignment:
| Q |
108 |
catagttatctgacgcgtatctgagttttccatttgcacttccaccagtgatttaagagctgacatccatgatggacgacactttgtagagtt |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
125704 |
catagttacctgacgcgtatctgagttttccatttgcacttccaccaatgatttaagagctgacacccatgatggacgacactttgtagagtt |
125796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 125671 - 125707
Alignment:
| Q |
14 |
cagagacacctatttctgtattttcgaaaaactcata |
50 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
125671 |
cagagacacctatttctgtattttcgaaaaactcata |
125707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 246 - 495
Target Start/End: Original strand, 14647619 - 14647868
Alignment:
| Q |
246 |
gattggaatattgctatgtctacccttattagtgacttctttcaacttttgtgcttgagacatatttcttggtttatccttcatgattttagtgtcttca |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
14647619 |
gattggaatattgctatgtctacccttattattgacttctttcaacttttgtgcatgagacatatttcttggtttatccttgatgattttagtgccttca |
14647718 |
T |
|
| Q |
346 |
tgcaatttttgtgttttaatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatat |
445 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| |
|
|
| T |
14647719 |
tgcaatttttgtgtttgaatctaaaatataaattgtatagttaatttagttaatgattaacaaatgattgaaaaacaaaatgaacattttttgtgtatat |
14647818 |
T |
|
| Q |
446 |
caatatacctgnnnnnnngaagtgaccgactcgtcacctctcctaatccc |
495 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
14647819 |
caatatacctgtttttttgaagtgaccgactcgtcacccctcctaatccc |
14647868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 14647387 - 14647573
Alignment:
| Q |
14 |
cagagacacctatttctgtattttcgaaaaactcatatatttgttctttggtaatttcttcatcatactgttcttcaccaaaaataccttcctccatagt |
113 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14647387 |
cagagacacctatttctgtattgttgaaaaactcatacatttgttctttggtaatttcttcattatactgttcttcaccaaaaataccttcctccatagt |
14647486 |
T |
|
| Q |
114 |
tatctgacgcgtatctgagttttccatttgcacttccaccagtgatttaagagctgacatccatgatggacgacactttgtagagtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
14647487 |
tatctgacgcgtatctgagttttccatttgcacttccaccaatgatttaagagctaacacccatgatggacgacactttgtagagtt |
14647573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 246 - 456
Target Start/End: Original strand, 28621279 - 28621489
Alignment:
| Q |
246 |
gattggaatattgctatgtctacccttattagtgacttctttcaacttttgtgcttgagacatatttcttggtttatccttcatgattttagtgtcttca |
345 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
28621279 |
gattggaatattgctatgtccactcttattagtgacttctttcaacttttgtgcttgagacatattttttggtttatccttcatgattttagtgccttca |
28621378 |
T |
|
| Q |
346 |
tgcaatttttgtgttttaatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatat |
445 |
Q |
| |
|
| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
28621379 |
tacaatttttgtgggtgaatctaaaatattaattgtatagttaatttagttaatgattaaaaaatgattgaatggcaaaatgaatatttcttgtgtatat |
28621478 |
T |
|
| Q |
446 |
caatatacctg |
456 |
Q |
| |
|
|||| ||||| |
|
|
| T |
28621479 |
taatagacctg |
28621489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 251 - 455
Target Start/End: Complemental strand, 28620613 - 28620409
Alignment:
| Q |
251 |
gaatattgctatgtctacccttattagtgacttctttcaacttttgtgcttgagacatatttcttggtttatccttcatgattttagtgtcttcatgcaa |
350 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28620613 |
gaatattgctatgttcacccttattagtgacttctttcaacttttgtgcttgagacatatttcttggtttatccttcatgattttagtgtcttcaagcaa |
28620514 |
T |
|
| Q |
351 |
tttttgtgttttaatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatatcaata |
450 |
Q |
| |
|
| ||| || | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||| |||| |
|
|
| T |
28620513 |
tgtttatgggtgaatctaaaatattaattgtatagttaatttagttaatgattaacaaataattgaatagtaaaatgaacatttcttgcgtatattaata |
28620414 |
T |
|
| Q |
451 |
tacct |
455 |
Q |
| |
|
||||| |
|
|
| T |
28620413 |
tacct |
28620409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 28621051 - 28621230
Alignment:
| Q |
17 |
agacacctatttctgtattttcgaaaaactcatatatttgttctttggtaatttcttcatcatactgttcttcaccaaaaataccttcctccatagttat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| ||||||||| |||||| ||||||||| |||||||||||||| |
|
|
| T |
28621051 |
agacacctatttctgtattttcgaaaaactcatacatttggtctttggtaatgtctt-atcatactgctcttcaacaaaaatacattcctccatagttac |
28621149 |
T |
|
| Q |
117 |
ctgacgcgtatctgagttttccatttgcacttccaccagtgatttaagagctgacatccatgatggacgacactttgtaga |
197 |
Q |
| |
|
|||| |||||| || || ||||||||||||||||||| |||||||||||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
28621150 |
ctgaagcgtatttgtgtcttccatttgcacttccaccggtgatttaagagttgacacccacgatggacgacactttgtaga |
28621230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 35 - 200
Target Start/End: Complemental strand, 28620815 - 28620650
Alignment:
| Q |
35 |
tttcgaaaaactcatatatttgttctttggtaatttcttcatcatactgttcttcaccaaaaataccttcctccatagttatctgacgcgtatctgagtt |
134 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |||| ||||| ||||||| || |
|
|
| T |
28620815 |
tttcgaaaaactcatacatttgttctttggtaatgtcttcttcgtactgttcttcaccaaaaataccttcctccataattatatgacgggtatctgtgtc |
28620716 |
T |
|
| Q |
135 |
ttccatttgcacttccaccagtgatttaagagctgacatccatgatggacgacactttgtagagtt |
200 |
Q |
| |
|
||||||||||| | ||| |||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
28620715 |
ttccatttgcaatgccaacagtgatttaagagctgacacccacaatggacgacactttgtagagtt |
28620650 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 4e-83; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 246 - 499
Target Start/End: Complemental strand, 6765567 - 6765314
Alignment:
| Q |
246 |
gattggaatattgctatgtctacccttattagtgacttctttcaacttttgtgcttgagacatatttcttggtttatccttcatgattttagtgtcttca |
345 |
Q |
| |
|
|||| ||||||| | ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
6765567 |
gatttgaatatttccatgtccacccttattagtgacttctttcaacttttgtgctggagacatatttcttggtttattcttcatgattttagtactttca |
6765468 |
T |
|
| Q |
346 |
tgcaatttttgtgttttaatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatat |
445 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6765467 |
tgcaatttttgtatttgaatctaaaatattaattgtttagttaatttagttaatgattaataaatgattgaataataaaatgaacatttcttgtgtatat |
6765368 |
T |
|
| Q |
446 |
caatatacctgnnnnnnngaagtgaccgactcgtcacctctcctaatcccgtca |
499 |
Q |
| |
|
|| |||||||| || ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
6765367 |
cagtatacctgtttttttgatgtggccgactcgtcacccctcctaatcccgtca |
6765314 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 246 - 495
Target Start/End: Complemental strand, 6787997 - 6787746
Alignment:
| Q |
246 |
gattggaatattgctatgtctacccttattagtgacttctttcaacttttgtgcttgagacatatttcttggtttatccttcatgattttagtgtcttca |
345 |
Q |
| |
|
|||| ||||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
6787997 |
gatttgaatatttctatgtccacccttattagtgacttctttcaacttttgtactggagacatatttcttggtttattcttcatgattttagtactttca |
6787898 |
T |
|
| Q |
346 |
tgcaatttttgtgttttaatctaaaatattaattgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatat |
445 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
6787897 |
tgcaatttttgtatttgaatctaaaatattaattgtacaattaatttagttaatgattaataaatgattgaatagtaaaatgaacatttctagtgtatat |
6787798 |
T |
|
| Q |
446 |
ca--atatacctgnnnnnnngaagtgaccgactcgtcacctctcctaatccc |
495 |
Q |
| |
|
|| ||||||||| || ||| ||||||||||||| ||||||||||| |
|
|
| T |
6787797 |
cagtatatacctgtttttttgatgtggccgactcgtcacccctcctaatccc |
6787746 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 6765799 - 6765611
Alignment:
| Q |
14 |
cagagacacctatttctgtattttcgaaaaactcatatatttgttctttggtaatttcttcatcatactgttcttcaccaaaaataccttcctccatagt |
113 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| | ||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6765799 |
cagagacacctatttctgtactttcgaaaaactcatacatttgttttttggtaatgttttcatgatactgttcttcaccaaaaatactttcctccatagt |
6765700 |
T |
|
| Q |
114 |
tatctgacgcgtatctgagttttc---catttgcacttccaccagtgatttaagagctgacatccatgatggacgacactttgtagagt |
199 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| ||| ||| ||||||||||| |||||||||| |
|
|
| T |
6765699 |
tatctgacgcgtatctgtgttttccatcatttgcactgccaccagtgatttaagagcaaacacccacgatggacgacaatttgtagagt |
6765611 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 6788229 - 6788041
Alignment:
| Q |
14 |
cagagacacctatttctgtattttcgaaaaactcatatatttgttctttggtaatttcttcatcatactgttcttcaccaaaaataccttcctccatagt |
113 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||| ||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6788229 |
cagagacacctatttctgtactttcaaaaaactcatgcatttgttctttggtaatgttttcatgatactgttcttcaccaaaaatactttcctccatagt |
6788130 |
T |
|
| Q |
114 |
tatctgacgcgtatctgagttttc---catttgcacttccaccagtgatttaagagctgacatccatgatggacgacactttgtagagt |
199 |
Q |
| |
|
|||||||||| |||||| |||||| |||||||||| ||||||||||||||||||| ||| ||| ||||||||||| |||||||||| |
|
|
| T |
6788129 |
tatctgacgcatatctgtgttttccatcatttgcactgccaccagtgatttaagagcaaacacccacgatggacgacaatttgtagagt |
6788041 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 273 - 455
Target Start/End: Complemental strand, 20027938 - 20027759
Alignment:
| Q |
273 |
attagtgacttctttcaacttttgtgcttgaga---catatttcttggtttatccttcatgattttagtgtcttcatgcaatttttgtgttttaatctaa |
369 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||| || ||||| ||||||| ||||||| ||||||| |
|
|
| T |
20027938 |
attagtgttttctttcaatttttgtgtttgagctgccatatttcttggtttatccttcatgattttactgccttcacgcaatttatgtgtttgaatctaa |
20027839 |
T |
|
| Q |
370 |
aatattaattgtatagttaatttagttaatgattaacaaatgattgaatagcaaaatgaacatttcttgtgtatatcaatatacct |
455 |
Q |
| |
|
|| ||||||||||||| |||| |||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
20027838 |
----tttattgtatagttaaattagctaatgattaataaatgattgaatagtaaaatgaacatttcttgtg--tatcaatatacct |
20027759 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 20028200 - 20028019
Alignment:
| Q |
14 |
cagagacacctatttctgtattttcgaaaaactcatatatttgttctttggtaatttcttcatcatactgttcttcaccaaaaataccttcctccatagt |
113 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||| | ||| |||||| |||| |||| ||||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
20028200 |
cagagacacttatttctgtattttcaaaaaactcattcagttgctctttgataatgtcttgttcatattgttc---accaaaaataccttcatccatagt |
20028104 |
T |
|
| Q |
114 |
tatctgacgcgtatctgagttttccatttgcacttccaccagtgatttaagagctgacatccatgatggacgacactttgtagag |
198 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||| || || ||||| ||| || ||| ||||||| | |||||||| ||||| |
|
|
| T |
20028103 |
tatctgacgcgtatctgtgttttccatttgcatttctacaagggattttagaactaacacacatgatgaatgacactttatagag |
20028019 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 500 - 550
Target Start/End: Original strand, 37865721 - 37865771
Alignment:
| Q |
500 |
atatgcgtcttacacacacttttgaaagataggtcaatttcctaaacatat |
550 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
37865721 |
atatgcgtcttacacaaacttttgaaagctaggtcaatttcctaaacatat |
37865771 |
T |
|
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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 8362934 - 8363024
Alignment:
| Q |
19 |
acacctatttctgtattttcgaaaaactcatatatttgttctttggtaatttcttcatcatactgttcttcaccaaaaataccttcctccatag |
112 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||||| |||||| ||| |||||| ||||| || || | |||||||||| |||||||||| |
|
|
| T |
8362934 |
acacctatttctgtattttggaaaaaatcattcatttgctctttgataacttcttcttcataatg---tttatcaaaaataccatcctccatag |
8363024 |
T |
|
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