View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_91 (Length: 236)
Name: NF16006_low_91
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_91 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 40276412 - 40276201
Alignment:
| Q |
20 |
gaaacatgttgcattaaataagtaattggaaggtgtatgttaaattcaatatatgcatcaactatggaagttggggggttaacaatgatatattgtatgg |
119 |
Q |
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| T |
40276412 |
gaaacatatttcattaaataagtaattggaaggtgtatgtcaaattcaatatatgcatcaactatggaagttggggggttaacaatgatatattgtatgg |
40276313 |
T |
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| Q |
120 |
ttggacgacttgtgcaagttaaagatacaagattgacagcatcaatcttgactgaga---------aatcatcacaatttaggcaataagggtcagaacg |
210 |
Q |
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| T |
40276312 |
ttggacgacttgtgcaagttaaagatacaagattgacagcatcaatcttgactgagaaatcggagaaatcatcacaatttaggcaataagggtcagaacg |
40276213 |
T |
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| Q |
211 |
gatggtcaaaat |
222 |
Q |
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| T |
40276212 |
gatggtcaaaat |
40276201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 40450898 - 40451110
Alignment:
| Q |
19 |
ggaaacatgttgcattaaataagtaattggaaggtgtatgttaaattcaatatatgcatcaactatggaagttggggggttaacaatgatatattgtatg |
118 |
Q |
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||||||||||||||||||||| |||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40450898 |
ggaaacatgttgcattaaatacgtaattggaaggcgtgtgtcaaattcaatatatgcatcaactatggaagttggggggttaacaatgatatattgtatg |
40450997 |
T |
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| Q |
119 |
gttggacgacttgtgcaagttaaagatacaagattgacagcatcaatcttgactgag---------aaatcatcacaatttaggcaataagggtcagaac |
209 |
Q |
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| T |
40450998 |
tttggacgacttgtgcaagttaaagatacaagattgacagcatcaatcttgactgagaaatcggataaatcatcacaatttaggcaataagggtcagaac |
40451097 |
T |
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| Q |
210 |
ggatggtcaaaat |
222 |
Q |
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| T |
40451098 |
ggatggtcaaaat |
40451110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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