View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16006_low_94 (Length: 235)

Name: NF16006_low_94
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16006_low_94
NF16006_low_94
[»] chr4 (31 HSPs)
chr4 (14-218)||(27420273-27420477)
chr4 (14-212)||(27570120-27570318)
chr4 (14-202)||(27425693-27425881)
chr4 (14-212)||(27423093-27423291)
chr4 (14-218)||(27415489-27415690)
chr4 (63-197)||(27412556-27412690)
chr4 (23-217)||(27566031-27566225)
chr4 (25-205)||(27563428-27563611)
chr4 (14-191)||(27444865-27445033)
chr4 (23-172)||(27585596-27585748)
chr4 (23-99)||(27506682-27506758)
chr4 (14-117)||(27468398-27468501)
chr4 (25-124)||(27476646-27476745)
chr4 (25-124)||(27513858-27513957)
chr4 (14-117)||(27514857-27514960)
chr4 (14-117)||(27524490-27524593)
chr4 (14-124)||(27486942-27487052)
chr4 (67-108)||(27498390-27498431)
chr4 (138-187)||(27526289-27526338)
chr4 (67-108)||(27554284-27554325)
chr4 (64-124)||(27469419-27469479)
chr4 (23-99)||(27478963-27479039)
chr4 (23-99)||(27486023-27486099)
chr4 (64-124)||(27500459-27500519)
chr4 (150-194)||(27500527-27500571)
chr4 (150-190)||(27516798-27516838)
chr4 (67-187)||(27557394-27557505)
chr4 (25-124)||(27526194-27526293)
chr4 (80-124)||(27466780-27466824)
chr4 (154-190)||(27501228-27501264)
chr4 (14-78)||(27503927-27503991)
[»] chr5 (3 HSPs)
chr5 (14-99)||(1756828-1756913)
chr5 (14-108)||(1754312-1754406)
chr5 (150-187)||(1754430-1754467)
[»] chr3 (4 HSPs)
chr3 (14-117)||(38024946-38025049)
chr3 (14-117)||(38031398-38031501)
chr3 (14-102)||(50909941-50910029)
chr3 (14-117)||(55084752-55084855)
[»] chr8 (1 HSPs)
chr8 (30-99)||(21607383-21607452)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 27420477 - 27420273
Alignment:
Q  14 tgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagatt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27420477 tgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagatt 27420378  T
Q  114 ttgaagctgatcggtttgcagaaaatgatgcctttctgatgataccagggaaacgaaaacccattgttgtatgtgttaaaactttagaagaaatggttta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27420377 ttgaagctgatcggtttgcagaaaatgatgcctttctgatgataccagggaaacgaaaacccattgttgtatgtgttaaaactttagaagaaatggttta 27420278  T
Q  214 aaaat 218  Q
    |||||    
T  27420277 aaaat 27420273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 27570120 - 27570318
Alignment:
Q  14 tgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagatt 113  Q
    ||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  27570120 tgaaatgaaggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatccacagctt 27570219  T
Q  114 ttgaagctgatcggtttgcagaaaatgatgcctttctgatgataccagggaaacgaaaacccattgttgtatgtgttaaaactttagaagaaatggttt 212  Q
    ||||||||||||||||| ||||||| |||||| |||||||||||||||||  ||||||||||||| ||||||||||||| |||| |||| |||||||||    
T  27570220 ttgaagctgatcggtttccagaaaaagatgcccttctgatgataccagggggacgaaaacccatttttgtatgtgttaacacttgagaataaatggttt 27570318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 27425881 - 27425693
Alignment:
Q  14 tgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagatt 113  Q
    |||||||| |||||| ||||||||||||  ||||| | ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27425881 tgaaatgatggttggttcaagtatgatattgggatcacataccgcttttgtttctctccaacatatactgcaagatatccctttggcacgtccacagctt 27425782  T
Q  114 ttgaagctgatcggtttgcagaaaatgatgcctttctgatgataccagggaaacgaaaacccattgttgtatgtgttaaaactttagaa 202  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||    
T  27425781 tcgaagctgatcggtttgcagaaaatgatgcctttctgatgataccagcaaaacgaaaacccattgttgtatgtgttaaaacttgagaa 27425693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 27423291 - 27423093
Alignment:
Q  14 tgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagatt 113  Q
    ||||||||||||||| |||||||||||| | |||| | || ||| |||||||||| |||||||||||| |||||||||| |||||||| |||| ||| ||    
T  27423291 tgaaatgaaggttggttcaagtatgatatgcggatcacatgccgtgtctgtttctatccaacatatacagcaagatatctctttggcatgtccgcagctt 27423192  T
Q  114 ttgaagctgatcggtttgcagaaaatgatgcctttctgatgataccagggaaacgaaaacccattgttgtatgtgttaaaactttagaagaaatggttt 212  Q
    ||||   || |||||||||||||||||| ||| ||||||| ||||||| |||||| | |||||||||||||||||||||||  ||||||||| ||||||    
T  27423191 ttgatattgctcggtttgcagaaaatgaggcccttctgataataccagagaaacggatacccattgttgtatgtgttaaaaagttagaagaagtggttt 27423093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 27415690 - 27415489
Alignment:
Q  14 tgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagatt 113  Q
    ||||| || |||||| |||||||||||| |||||| | | | ||| | |||||   ||||||||| ||||||||||||||||||||||| ||||||  ||    
T  27415690 tgaaacgatggttggttcaagtatgatatggggatcacaaatcgcttttgttt---tccaacatacactgcaagatatccctttggcacatccacaactt 27415594  T
Q  114 ttgaagctgatcggtttgcagaaaatgatgcctttctgatgataccagggaaacgaaaacccattgttgtatgtgttaaaactttagaagaaatggttta 213  Q
    |||||  |  |||| ||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| ||||     
T  27415593 ttgaaattactcggcttgcagaaaatgatgactttctgatgatactagggacacgaaaacccattgttgtatgtgttaaaacttgagaagaaattgtttt 27415494  T
Q  214 aaaat 218  Q
    |||||    
T  27415493 aaaat 27415489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 63 - 197
Target Start/End: Complemental strand, 27412690 - 27412556
Alignment:
Q  63 gtttctctccaacatatactgcaagatatccctttggcacgtccacagattttgaagctgatcggtttgcagaaaatgatgcctttctgatgataccagg 162  Q
    |||||||||||||||| || |||| |||||||||||||| ||| |||| ||||||| ||| |||||||||||||||||||||| |||||||||||||||     
T  27412690 gtttctctccaacatacacggcaatatatccctttggcatgtcaacagcttttgaaactgctcggtttgcagaaaatgatgcccttctgatgataccaga 27412591  T
Q  163 gaaacgaaaacccattgttgtatgtgttaaaactt 197  Q
    |||||||||||||||| |||||||||||| |||||    
T  27412590 gaaacgaaaacccatttttgtatgtgttagaactt 27412556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 217
Target Start/End: Original strand, 27566031 - 27566225
Alignment:
Q  23 ggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagattttgaagctg 122  Q
    |||||| ||| |||||||| |||||| | | | ||| | ||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||    
T  27566031 ggttggttcaggtatgatatggggatcacaaatcgcttttgtttctctccaacatacactgcaagatatccctttggcacgtccacaacttttgaaactg 27566130  T
Q  123 atcggtttgcagaaaatgatgcctttctgatgataccagggaaacgaaaacccattgttgtatgtgttaaaactttagaagaaatggtttaaaaa 217  Q
     ||||||| ||  |||||||||| || |||| |||| |||||||||||||||||||| |||||| ||| |||||| |||| || |||||| ||||    
T  27566131 ctcggtttccaacaaatgatgcccttttgataatactagggaaacgaaaacccattgctgtatgcgttcaaacttgagaaaaattggttttaaaa 27566225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 27563428 - 27563611
Alignment:
Q  25 ttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagattttgaagctgat 124  Q
    |||| ||||||||||||||||||| | |   | | | ||||| |||||||| || ||||||||||| ||||||||||||||||||  ||||| | |||||    
T  27563428 ttggttcaagtatgatacggggatcacaattctcttttgtttatctccaacgtacactgcaagatagccctttggcacgtccacaacttttgtaactgat 27563527  T
Q  125 cggtttgcagaaaa---tgatgcctttctgatgataccagggaaacgaaaacccattgttgtatgtgttaaaactttagaagaa 205  Q
    ||| ||| || |||   ||||| | |||| ||||||||||| |||||||||||||||| ||  ||||||||||||| |||||||    
T  27563528 cggcttgaagtaaacgatgatgaccttctaatgataccaggtaaacgaaaacccattgctgagtgtgttaaaacttgagaagaa 27563611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 27444865 - 27445033
Alignment:
Q  14 tgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagatt 113  Q
    |||||||| | |||||||||||||||||  ||||| | | ||| | ||  || ||||||||| |||||||||||||||||||||||||| |||||   ||    
T  27444865 tgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttggcacatccacgcctt 27444964  T
Q  114 ttgaagctgatcggtttgcagaaaatgatgcctttctgatgataccagggaaacgaaaacccattgttgtatgtgtta 191  Q
    |||||| || | ||||||||         ||| ||||||||||||| |  ||||||||||||||| ||||||||||||    
T  27444965 ttgaagatgtttggtttgca---------gcccttctgatgataccggttaaacgaaaacccattcttgtatgtgtta 27445033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 172
Target Start/End: Complemental strand, 27585748 - 27585596
Alignment:
Q  23 ggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagattttgaagctg 122  Q
    |||||| ||||||||||||||||||| | | | | | | ||||| || |||||  | ||||| ||||||||||||||||||||||||  ||||||| |||    
T  27585748 ggttggttcaagtatgatacggggatcacaaatctcttttgtttatcaccaacgcacactgcgagatatccctttggcacgtccacaacttttgaaactg 27585649  T
Q  123 atcggtttgcagaaaatgatgc---ctttctgatgataccagggaaacgaaaa 172  Q
    ||||| ||| || ||||||||    | |||| ||||||||||| |||||||||    
T  27585648 atcggcttgaagtaaatgatgatgaccttctaatgataccaggtaaacgaaaa 27585596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 27506758 - 27506682
Alignment:
Q  23 ggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttgg 99  Q
    |||||| | ||||||||||  ||||| | | ||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  27506758 ggttggtttaagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttgg 27506682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 27468398 - 27468501
Alignment:
Q  14 tgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagatt 113  Q
    ||||||||||||||| | ||||||||||| |||| || | |||||  | |||||||||||||||| || |||| ||| ||||||  ||| || |||||||    
T  27468398 tgaaatgaaggttggtttaagtatgatacagggactacaaaccgcaccagtttctctccaacatacaccgcaacatagccctttctcacttctacagatt 27468497  T
Q  114 ttga 117  Q
    ||||    
T  27468498 ttga 27468501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 27476745 - 27476646
Alignment:
Q  25 ttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagattttgaagctgat 124  Q
    |||| ||||||||||||| || || | | ||||| ||  |||||| |||||||| ||||| |||||||||||||| |||||||| | |||||||| ||||    
T  27476745 ttggttcaagtatgatacaggaatcacaaaccgcttcattttctcaccaacatacactgctagatatccctttggaacgtccacggtttttgaagatgat 27476646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 27513858 - 27513957
Alignment:
Q  25 ttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagattttgaagctgat 124  Q
    |||| ||||||||||||  ||||| | | ||||| ||  ||||||||| ||||| ||||| |||||||| ||||||||||| |||| |||||||| ||||    
T  27513858 ttggttcaagtatgatattgggatcacaaaccgcttcattttctctcctacatacactgctagatatccttttggcacgtcaacagcttttgaagatgat 27513957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 27514960 - 27514857
Alignment:
Q  14 tgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagatt 113  Q
    ||||||||||||||  ||||||||||||| |||| || | |||||  | |||||||||||||||| || |||| ||| ||||||  ||| || |||||||    
T  27514960 tgaaatgaaggttgattcaagtatgatacagggactacaaaccgcaccagtttctctccaacatacaccgcaacatagccctttctcacttctacagatt 27514861  T
Q  114 ttga 117  Q
    ||||    
T  27514860 ttga 27514857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 27524593 - 27524490
Alignment:
Q  14 tgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagatt 113  Q
    ||||||||||||||| |||| |||||||| || | ||   |||||||| |||||||||||||||| |||||||  || ||||||  ||| || |||||||    
T  27524593 tgaaatgaaggttggttcaaatatgatacaggaactatgaaccgcgtcagtttctctccaacatacactgcaacgtagccctttctcacttctacagatt 27524494  T
Q  114 ttga 117  Q
    ||||    
T  27524493 ttga 27524490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 27487052 - 27486942
Alignment:
Q  14 tgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagatt 113  Q
    ||||| || |||||| | ||||||||||  ||||| | | ||||| ||  ||||||||| || || ||||| |||||||||||||| |||||||||| ||    
T  27487052 tgaaacgatggttggtttaagtatgataaagggatcacaaaccgcttcattttctctcctacgtacactgctagatatccctttggaacgtccacagctt 27486953  T
Q  114 ttgaagctgat 124  Q
    |||||| ||||    
T  27486952 ttgaagatgat 27486942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 27498431 - 27498390
Alignment:
Q  67 ctctccaacatatactgcaagatatccctttggcacgtccac 108  Q
    |||||||||||||||||| |||||||||||||||| ||||||    
T  27498431 ctctccaacatatactgctagatatccctttggcatgtccac 27498390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 27526289 - 27526338
Alignment:
Q  138 atgatgcctttctgatgataccagggaaacgaaaacccattgttgtatgt 187  Q
    |||||||| || ||||||||| ||| ||||||||||||||||||||||||    
T  27526289 atgatgcccttttgatgatactaggtaaacgaaaacccattgttgtatgt 27526338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 27554325 - 27554284
Alignment:
Q  67 ctctccaacatatactgcaagatatccctttggcacgtccac 108  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  27554325 ctctccaacatatactgcaaggtatccctttggcacatccac 27554284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 27469479 - 27469419
Alignment:
Q  64 tttctctccaacatatactgcaagatatccctttggcacgtccacagattttgaagctgat 124  Q
    ||||||||| || || ||||| |||||||||||||| |||||||||| |||||||| ||||    
T  27469479 tttctctcctacgtacactgctagatatccctttggaacgtccacagcttttgaagatgat 27469419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 27478963 - 27479039
Alignment:
Q  23 ggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttgg 99  Q
    |||||| ||||||||||||  ||||  | | ||||| ||||||||||||||||||| ||||||| ||| ||||||||    
T  27478963 ggttggttcaagtatgatattgggacaacaaaccgcttctgtttctctccaacatacactgcaacatagccctttgg 27479039  T

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Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 27486023 - 27486099
Alignment:
Q  23 ggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttgg 99  Q
    |||||| ||||||||||||  ||||  | | ||||| ||||||||||||||||||| ||||||| ||| ||||||||    
T  27486023 ggttggttcaagtatgatattgggacaacaaaccgcttctgtttctctccaacatacactgcaacatagccctttgg 27486099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 27500459 - 27500519
Alignment:
Q  64 tttctctccaacatatactgcaagatatccctttggcacgtccacagattttgaagctgat 124  Q
    ||||||||| || || ||||| |||||||| ||||| ||||||||||||||||||| ||||    
T  27500459 tttctctcctacgtacactgctagatatccttttggtacgtccacagattttgaagatgat 27500519  T

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Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 27500527 - 27500571
Alignment:
Q  150 tgatgataccagggaaacgaaaacccattgttgtatgtgttaaaa 194  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||||    
T  27500527 tgatgatactaggtaaacgaaaacccattgttgtacgtgttaaaa 27500571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 27516798 - 27516838
Alignment:
Q  150 tgatgataccagggaaacgaaaacccattgttgtatgtgtt 190  Q
    ||||||||| ||| |||||||||||||||||||||||||||    
T  27516798 tgatgatactaggtaaacgaaaacccattgttgtatgtgtt 27516838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 27557505 - 27557394
Alignment:
Q  67 ctctccaacatatactgcaagatatccctttggcacgtccacagattttgaagctgatcggtttgcagaaaatgatgcctttctgatgataccagggaaa 166  Q
    ||||||||||||||| |||||||||||| ||||||| ||||||   ||||||| || | ||||         ||||||| ||||||||||| |||| |||    
T  27557505 ctctccaacatatacggcaagatatccccttggcacatccacaccctttgaagatgcttggtt---------tgatgcccttctgatgataacaggtaaa 27557415  T
Q  167 cgaaaacccattgttgtatgt 187  Q
    |||||||||||| || |||||    
T  27557414 cgaaaacccattcttatatgt 27557394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 27526194 - 27526293
Alignment:
Q  25 ttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagattttgaagctgat 124  Q
    |||| ||||||||||||| || || | | ||||| ||  ||||||||||||||| ||||| |||||||||||||| || || |||  |||||||| ||||    
T  27526194 ttggttcaagtatgatacaggaatcacaaaccgcttcattttctctccaacatacactgctagatatccctttggaacatcgacaccttttgaagatgat 27526293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 27466824 - 27466780
Alignment:
Q  80 actgcaagatatccctttggcacgtccacagattttgaagctgat 124  Q
    ||||| |||||||||||||| ||| ||||||||||||||| ||||    
T  27466824 actgctagatatccctttggaacgcccacagattttgaagatgat 27466780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 27501264 - 27501228
Alignment:
Q  154 gataccagggaaacgaaaacccattgttgtatgtgtt 190  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  27501264 gataccaggtaaacgaaaacccattcttgtatgtgtt 27501228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 27503991 - 27503927
Alignment:
Q  14 tgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacata 78  Q
    ||||||||||||||| ||||||||||||| || | || | |||||| |  |||||||||||||||    
T  27503991 tgaaatgaaggttggttcaagtatgatacaggaactacaaaccgcgccaatttctctccaacata 27503927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 1756828 - 1756913
Alignment:
Q  14 tgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttgg 99  Q
    ||||| || |||||| ||||||||||||  ||||| | | ||||| ||||||||||||||||||  ||||||||||| ||||||||    
T  1756828 tgaaacgatggttggttcaagtatgatattgggatcacaaaccgcttctgtttctctccaacattcactgcaagatagccctttgg 1756913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 1754312 - 1754406
Alignment:
Q  14 tgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccac 108  Q
    |||||||| | |||| ||||||||||||||||||| | | ||||| ||  ||  |||||||||||||| || |||||||| |||||| |||||||    
T  1754312 tgaaatgacgattggttcaagtatgatacggggatcacaaaccgcttcatttcttctccaacatatacagctagatatccttttggctcgtccac 1754406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 1754430 - 1754467
Alignment:
Q  150 tgatgataccagggaaacgaaaacccattgttgtatgt 187  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  1754430 tgatgatactaggtaaacgaaaacccattgttgtatgt 1754467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 38024946 - 38025049
Alignment:
Q  14 tgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagatt 113  Q
    ||||| |||| |||| |||||||||| | |||||| | | ||||| ||  || |||||||||||||||||||||||| |||||||| || | ||||| ||    
T  38024946 tgaaaggaagcttggttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttggtacattcacagctt 38025045  T
Q  114 ttga 117  Q
    ||||    
T  38025046 ttga 38025049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 38031398 - 38031501
Alignment:
Q  14 tgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagatt 113  Q
    ||||| |||| |||| |||||||||| | |||||| | | ||||| ||  || |||||||||||||||||||||||| |||||||| || | ||||| ||    
T  38031398 tgaaaggaagcttggttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttggtacattcacagctt 38031497  T
Q  114 ttga 117  Q
    ||||    
T  38031498 ttga 38031501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 50910029 - 50909941
Alignment:
Q  14 tgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcac 102  Q
    |||||||||| |||| |||||||||| | |||||| | | |||||  |  || |||||||||||| ||||||||||| |||||||||||    
T  50910029 tgaaatgaagcttggttcaagtatgacatggggataacaaaccgcagcatttgctctccaacatacactgcaagataaccctttggcac 50909941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 55084855 - 55084752
Alignment:
Q  14 tgaaatgaaggttggctcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacgtccacagatt 113  Q
    |||||||| |||||| ||||||| || |  ||||| | | ||||| ||  ||||||||||||||| ||||||||| | || |||||||| | ||||||||    
T  55084855 tgaaatgatggttggttcaagtaagacatagggatcacaaaccgcttcattttctctccaacatacactgcaagacacccttttggcacattcacagatt 55084756  T
Q  114 ttga 117  Q
    ||||    
T  55084755 ttga 55084752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 21607383 - 21607452
Alignment:
Q  30 tcaagtatgatacggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttgg 99  Q
    |||||||||| | |||||| | | ||||| ||  || ||||||||||||||| |||||||||||||||||    
T  21607383 tcaagtatgacatggggataacaaaccgcttcatttgctctccaacatataccgcaagatatccctttgg 21607452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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