View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16006_low_97 (Length: 228)
Name: NF16006_low_97
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16006_low_97 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 89 - 215
Target Start/End: Complemental strand, 42444240 - 42444114
Alignment:
| Q |
89 |
ccaataattatactttttatttaatttgaatcacatcgtatttaagttttgtaccaactcaactcaactcacggtgcaaactaaggcacacactatacaa |
188 |
Q |
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| T |
42444240 |
ccaattattatattttttatttaatttgaatcacatcgtatttaagttttgtaccaactcaactcaactcacggtgcaaaataaggcacacactatacaa |
42444141 |
T |
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| Q |
189 |
attaaaaccttgtagttgtacatattg |
215 |
Q |
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| T |
42444140 |
attaaaaccttgtagttgtacatattg |
42444114 |
T |
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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 42444706 - 42444625
Alignment:
| Q |
16 |
atgaaagacaaagaccaatatttttaataatataaccaatcaggagcgcagccttcacctattgaaatttagcccaataatta |
98 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42444706 |
atgaaagacaaagaccaatatttt-aataatataaccaatcaggagcgcagccttcacctattgaaatttagcccaataatta |
42444625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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