View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16006_low_99 (Length: 227)

Name: NF16006_low_99
Description: NF16006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16006_low_99
NF16006_low_99
[»] chr2 (5 HSPs)
chr2 (1-227)||(7499615-7499841)
chr2 (80-225)||(7429787-7429932)
chr2 (168-225)||(29353315-29353372)
chr2 (168-225)||(44919371-44919428)
chr2 (185-225)||(16920106-16920146)
[»] chr6 (7 HSPs)
chr6 (140-225)||(287452-287537)
chr6 (154-223)||(21379311-21379380)
chr6 (135-223)||(29144408-29144496)
chr6 (135-193)||(32745708-32745766)
chr6 (185-225)||(2742756-2742796)
chr6 (135-223)||(29136418-29136506)
chr6 (175-223)||(32973522-32973570)
[»] chr1 (1 HSPs)
chr1 (174-222)||(51875558-51875606)
[»] chr5 (2 HSPs)
chr5 (174-225)||(42261508-42261559)
chr5 (186-223)||(40415105-40415142)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 7499615 - 7499841
Alignment:
Q  1 aatctaatttgaccatgttcttagacctctcactagaaagaaaatacatagaggtctcgaatattttataatcgttaatagtatgttgtaggaggtaaga 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7499615 aatctaatttgatcatgttcttagacctctcactagaaagaaaatacatagaggtctccaatattttataatcgttaatagtatgttgtaggaggtaaga 7499714  T
Q  101 tgtgccctcgtgatcaacatgatttctagctataaaattgttgcgataaatgctcataaaatgagtatttttaaataagagagtccatgatttacataca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||     
T  7499715 tgtgccctcgtgatcaacatgatttctagctataaaattgttgcgataaatgctcataaaatgagtatcttcaaataagagagtccatgatttacatacg 7499814  T
Q  201 catccaaaccgcttcaaagattttacc 227  Q
    || |||||||||||||||| |||||||    
T  7499815 caaccaaaccgcttcaaagtttttacc 7499841  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 225
Target Start/End: Original strand, 7429787 - 7429932
Alignment:
Q  80 agtatgttgtaggaggtaagatgtgccctcgtgatcaacatgatttctagctataaaattgttgcgataaatgctcataaaatgagtatttttaaataag 179  Q
    ||||||| |||||| |||||||||  | |||| ||||  ||||||  | | ||| |||||||||||||| ||| |||| |||||||  | || |||||||    
T  7429787 agtatgtcgtaggatgtaagatgtatcatcgtaatcaggatgattcttggatatgaaattgttgcgatagatgttcatgaaatgagggtcttgaaataag 7429886  T
Q  180 agagtccatgatttacatacacatccaaaccgcttcaaagatttta 225  Q
    |  | ||||||||| ||||| |||||||| ||||||||||||||||    
T  7429887 atggcccatgatttgcatacgcatccaaatcgcttcaaagatttta 7429932  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 29353315 - 29353372
Alignment:
Q  168 tttttaaataagagagtccatgatttacatacacatccaaaccgcttcaaagatttta 225  Q
    |||| ||||||||||| ||||| ||||  ||| |||||||| ||||||||||||||||    
T  29353315 ttttcaaataagagagaccatgttttatttacgcatccaaaacgcttcaaagatttta 29353372  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 44919371 - 44919428
Alignment:
Q  168 tttttaaataagagagtccatgatttacatacacatccaaaccgcttcaaagatttta 225  Q
    |||| ||||||||||| ||||||||||| ||||||| ||||  |||| ||||||||||    
T  44919371 ttttcaaataagagagcccatgatttacgtacacattcaaatggcttaaaagatttta 44919428  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 16920146 - 16920106
Alignment:
Q  185 ccatgatttacatacacatccaaaccgcttcaaagatttta 225  Q
    ||||||||||| ||| |||||||| ||||||||||||||||    
T  16920146 ccatgatttacgtacgcatccaaatcgcttcaaagatttta 16920106  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 287452 - 287537
Alignment:
Q  140 gttgcgataaatgctcataaaatgagtatttttaaataagagagtccatgatttacatacacatccaaaccgcttcaaagatttta 225  Q
    ||||||||| ||| |||| || |||  ||||| ||| |||||||||||||||||||||||||||||||| || || ||||||||||    
T  287452 gttgcgatacatggtcatgaagtgaagattttcaaacaagagagtccatgatttacatacacatccaaatcgttttaaagatttta 287537  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 21379311 - 21379380
Alignment:
Q  154 tcataaaatgagtatttttaaataagagagtccatgatttacatacacatccaaaccgcttcaaagattt 223  Q
    |||| |||| ||| |||| ||||||||||| |||||||||||  || |||||||| ||||||||||||||    
T  21379311 tcatgaaataagtgttttcaaataagagagaccatgatttacggacgcatccaaatcgcttcaaagattt 21379380  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 29144496 - 29144408
Alignment:
Q  135 aaattgttgcgataaatgctcataaaatgagtatttttaaataagagagtccatgatttacatacacatccaaaccgcttcaaagattt 223  Q
    |||||||||||  | ||| |||| |||||||||| || ||||||||||  ||| |||||||  || |||||||| ||||||||||||||    
T  29144496 aaattgttgcggaacatgttcatgaaatgagtatcttcaaataagagataccaagatttacgaacgcatccaaatcgcttcaaagattt 29144408  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 32745708 - 32745766
Alignment:
Q  135 aaattgttgcgataaatgctcataaaatgagtatttttaaataagagagtccatgattt 193  Q
    |||||||||||| | ||| |||| ||||||||||||| | ||||||||| |||||||||    
T  32745708 aaattgttgcgaaacatgttcatgaaatgagtattttcagataagagagaccatgattt 32745766  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 2742756 - 2742796
Alignment:
Q  185 ccatgatttacatacacatccaaaccgcttcaaagatttta 225  Q
    ||||||||||||||| |||||||| ||||| ||||||||||    
T  2742756 ccatgatttacatacgcatccaaatcgctttaaagatttta 2742796  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 29136506 - 29136418
Alignment:
Q  135 aaattgttgcgataaatgctcataaaatgagtatttttaaataagagagtccatgatttacatacacatccaaaccgcttcaaagattt 223  Q
    |||||||||||  | ||| |||| ||| ||||||||| ||||||||||| ||||||||| || || ||| |||  ||||| ||||||||    
T  29136506 aaattgttgcggaacatgttcatgaaacgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagattt 29136418  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 32973522 - 32973570
Alignment:
Q  175 ataagagagtccatgatttacatacacatccaaaccgcttcaaagattt 223  Q
    ||||||||| |||||||||||| |||||| |||| ||||| ||||||||    
T  32973522 ataagagagaccatgatttacaaacacattcaaaacgcttgaaagattt 32973570  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 51875558 - 51875606
Alignment:
Q  174 aataagagagtccatgatttacatacacatccaaaccgcttcaaagatt 222  Q
    |||||||| | |||||||||||||||||||||||| ||||| |||||||    
T  51875558 aataagagtgaccatgatttacatacacatccaaatcgctttaaagatt 51875606  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 42261559 - 42261508
Alignment:
Q  174 aataagagagtccatgatttacatacacatccaaaccgcttcaaagatttta 225  Q
    |||||||||| ||||||||| |||||||||  |||||||||||| |||||||    
T  42261559 aataagagagaccatgatttgcatacacatataaaccgcttcaatgatttta 42261508  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 40415142 - 40415105
Alignment:
Q  186 catgatttacatacacatccaaaccgcttcaaagattt 223  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  40415142 catgatttgcatacacatccaaacctcttcaaagattt 40415105  T

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