View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16007_high_2 (Length: 587)
Name: NF16007_high_2
Description: NF16007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16007_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Complemental strand, 37582419 - 37582006
Alignment:
| Q |
16 |
cctttgaccagagaatctttagctttgaaagcctgcatataaatctaacaatttacttattgtctatagagtccaaatctatgtattatca---aagtga |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
37582419 |
cctttgaccagagaatctttagctttgaaagcctgcatataaatctaacaatttacttattgtctatagagtccaaatctatgtagtatcagtaaagtga |
37582320 |
T |
|
| Q |
113 |
aaggagacagcaacgtcaaagtgcctggcaaattgcacaccacagagcgcacagctgcagaatttggtgcaacaaaaataggtagatgggtaggcaaagc |
212 |
Q |
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| T |
37582319 |
aaggagacagcaacgtcaaagtgcctggcaaattgcacaccacagagcgcacagctgcagaatttggtgcaacaaaaataggtagatgggtaggcaaagc |
37582220 |
T |
|
| Q |
213 |
agcagatctaattcactttcctcgggtgggcagaaaaaagatatcacggatcggcagaatatgaatctgtagaataaacaatgcaatacaacaagtccag |
312 |
Q |
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| T |
37582219 |
agcagatctaattcactttcctcgggtgggcagaaaaaagatatcacggatcggcagaatatgaatctgtagaataaacaatgcaatacaacaagtccag |
37582120 |
T |
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| Q |
313 |
tcagtaacttcaattttagtagtgcccaaagaagtctaggtggcaatcaacccaccgcaataccaaacatgcatcaatcaaaataaagaatgcattggct |
412 |
Q |
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| T |
37582119 |
tcagtaacttcaattttagtagtgcccaaagaagtctaggtggcaatcaacccaccgcaataccaaacatgcatcaatcaaaataaagaatgcattggct |
37582020 |
T |
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| Q |
413 |
aattcatatgagag |
426 |
Q |
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| T |
37582019 |
aattcatatgagag |
37582006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 24 - 296
Target Start/End: Complemental strand, 37575655 - 37575378
Alignment:
| Q |
24 |
cagagaatctttagctttgaaagcctgcatataaatctaacaatttacttattgtctatagagtccaaatct-atgtattatca---aagtgaaaggaga |
119 |
Q |
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||||||||||||||||| ||| |||||||||||||||| ||||||||| |||| |||||||||||||||| ||||||||||| |||||||||||| |
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| T |
37575655 |
cagagaatctttagcttcaaaaatctgcatataaatctaataatttacttgttgtatatagagtccaaatcttatgtattatcagtaaagtgaaaggagt |
37575556 |
T |
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| Q |
120 |
cagcaacgtcaaagtgcctggcaaattgcac-accacagagcgcacagctgcagaatttggtgcaacaaaaataggtagatggg-taggcaaagcagcag |
217 |
Q |
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||||||||||||||||| |||||| |||||| ||||| |||||||||||| |||| |||||||||||| || |||| ||||||| |||||||||| |||| |
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| T |
37575555 |
cagcaacgtcaaagtgcttggcaagttgcacgaccactgagcgcacagcttcagattttggtgcaacagaagtaggcagatggggtaggcaaagcggcag |
37575456 |
T |
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| Q |
218 |
atctaattcactttcctcgggtgggcagaaaaaagatatcacggatcggcagaatatgaatctgtagaataaacaatgc |
296 |
Q |
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| T |
37575455 |
atgtaattcactttcctcaggtgggcagaaaaaagatatcacggatcggcagaatatgaatctgtag-ataaacaatgc |
37575378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 488 - 578
Target Start/End: Complemental strand, 37581944 - 37581854
Alignment:
| Q |
488 |
ggatcagttataacttgtgctcatactaaacccatgatagttgatgagcaaagaattgcttcccactcaaagaaagcattggtgatgatgt |
578 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
37581944 |
ggatcagttataacttgtgctcatactaaacccatgatagttgatgagcaaagaattgcttcccactcaaagaaagcattggcgattatgt |
37581854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 491 - 578
Target Start/End: Complemental strand, 37575193 - 37575106
Alignment:
| Q |
491 |
tcagttataacttgtgctcatactaaacccatgatagttgatgagcaaagaattgcttcccactcaaagaaagcattggtgatgatgt |
578 |
Q |
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| T |
37575193 |
tcagttataacttgtgcccatactaaatccatgatagttgatgagcaaagaattacttcccactcggagaaagcattggtgattatgt |
37575106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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