View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16007_low_1 (Length: 752)
Name: NF16007_low_1
Description: NF16007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16007_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 698; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 16 - 742
Target Start/End: Original strand, 11245970 - 11246698
Alignment:
| Q |
16 |
aatctgagatgacaaatccctgacaaataagtgaataaaattgaagttagacttaatactgaattcaatagttctagtagttgatgatgccaaataatat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
11245970 |
aatctgagatgacaaatccctgacaaataagtgaataaaattgaagttagacttaatactgaattcaatagttctactagttgatgatgccaaatgatat |
11246069 |
T |
|
| Q |
116 |
tttatttcctaacaaagaactaaatctccgcgtttattatgtaattatgtataagaaaaaaggaagaatatagagagaccaatcaccttaaacttaagag |
215 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11246070 |
tttctttcctaacaaagaactaaatctccgcgtttattatgtaattatgtataagaaaaaaggaagaatatagagagaccaatcaccttaaacttaagag |
11246169 |
T |
|
| Q |
216 |
tattcttgaggtagccagtaattagatcacgattcgcatgcatcttcacaccgttccaacttgagtatgaagccataactgtagagacccccttaataat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11246170 |
tattcttgaggtagccagtaattagatcacgattcgcatgcatcttcacaccgttccaacttgagtatgaagccataactgtagagacccccttaataat |
11246269 |
T |
|
| Q |
316 |
ggaatcaatatacgcaggcatgtgaaggctcatcaatgtatgccaatcaaccaccgcgttgttctcatttactcccttggttgtaccaccatctccaacg |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11246270 |
ggaatcaatatacgcaggcatgtgaaggctcatcaatgtatgccaatcaaccaccgcgttgttctcatttagtcccttggttgtaccaccatctccaaca |
11246369 |
T |
|
| Q |
416 |
aagtgcttagcacaagccgctacctttgtcctacaagaaaagaataactttattagcctagtgaatgatagaggaacagcatgaaccatttttaataagt |
515 |
Q |
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| T |
11246370 |
aagtgcttagcacaagccgctacctttgtcctacaagaaaagaataactttattagcctagtgaatgatagaggaacagcatgaaccatttttaataagt |
11246469 |
T |
|
| Q |
516 |
gacataagtaactacat--aaatacaagagaattattcaatcatgatctttttgttcatttatgtgcaacataacaacggtggttaatgtttgtgatatt |
613 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11246470 |
gacataagtaactacataaaaatacaagagaattattcaatcatgatctttttgttcatttatgtgcaacataacaacggtggttaatgtttgtgatatt |
11246569 |
T |
|
| Q |
614 |
aataatgtcatacttgccgccaacatatggaactcccttcctagcacccggcgggatatctccttgtagaccaggtatgatctctgtcatttctcgcaca |
713 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11246570 |
aataatgtcatacttgccgccaacatatggaactcccttcctagcacccggcgggatatctccttgtagaccaggtatgatctctgtcatttctcgcaca |
11246669 |
T |
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| Q |
714 |
attttaggatcctcgctatagctttcata |
742 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
11246670 |
attttaggatcctcgctatagctttcata |
11246698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 374 - 441
Target Start/End: Complemental strand, 35992437 - 35992370
Alignment:
| Q |
374 |
ttgttctcatttactcccttggttgtaccaccatctccaacgaagtgcttagcacaagccgctacctt |
441 |
Q |
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||||||||||| | ||||||||||| ||||||||||| ||||||||||| |||||||| || ||||| |
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| T |
35992437 |
ttgttctcattgatacccttggttgtgccaccatctcccacgaagtgcttggcacaagctgcaacctt |
35992370 |
T |
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