View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16007_low_3 (Length: 338)
Name: NF16007_low_3
Description: NF16007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16007_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 40825377 - 40825678
Alignment:
| Q |
11 |
caaaggtcaaatatacaataaattctagtaacttctttctgtgaacaatatatgtgcacatatacatgtctctagttatagatcttgatgaagttcatga |
110 |
Q |
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| T |
40825377 |
caaagatcaaatatacaataaattctagtaactt----------acaatatatgtgcacatatacatgtctctagttatagatcttgatgaagttcatga |
40825466 |
T |
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| Q |
111 |
tctttttacacaaactgagccaaatactaatcacaaaactttagataagttacaaagacattgtgtcagnnnnnnnnnnnnnnnnnnnnnttacaagagc |
210 |
Q |
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| T |
40825467 |
tctttttacacaaactgagccaaatactaatcacaaaactttagataagttacaaagacattgtgtcagaaaaaaaaaaaaaaaaaaaaattacaagagc |
40825566 |
T |
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| Q |
211 |
gaaaagtttcccaaatgagggctctcaaatgaattgaattgtgcctaatatctgtcatatgtgaattgaatatctacattaagccgcatatcaaaccata |
310 |
Q |
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| T |
40825567 |
aaaaagtttcccaaatgagggctctcaaatgaattgaattgtgcctaatatctgtcatatgtgaattgaatatctacattaagccgcatatcaaaccata |
40825666 |
T |
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| Q |
311 |
gaccgtgatcag |
322 |
Q |
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| T |
40825667 |
gaccgtgatcag |
40825678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 40811744 - 40811807
Alignment:
| Q |
90 |
agatcttgatgaagttcatgatctttttacacaaactgagccaaatactaatcacaaaacttta |
153 |
Q |
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| T |
40811744 |
agatcctgatgaagctcatgatctttttatacaaactgagctaaacactagttgcaaaacttta |
40811807 |
T |
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