View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16007_low_4 (Length: 274)
Name: NF16007_low_4
Description: NF16007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16007_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 79 - 256
Target Start/End: Original strand, 28152251 - 28152428
Alignment:
| Q |
79 |
taatatgcactaatttatagttataggtagttatgaataaaatcaaacgcttttgaattgtgcagcttggttacaagtgagtaatggaaatgttcctgta |
178 |
Q |
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| T |
28152251 |
taatatgcactaatttatagttataggtagttatgaataaaatcaaacgcttttgaattgtgcagcttggttacaagtgagtaatggaaatgttcctgta |
28152350 |
T |
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| Q |
179 |
acagcagtagtcaaaacaaatgaaggatttaaattttgtggtgtcatttttgctgaatctaattgttggtctatgctt |
256 |
Q |
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| T |
28152351 |
acagcagtagttaaaacaaatgaaggatttaaattttgtggtgtcatttttgcggaatctaactgttggtctatgctt |
28152428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 28151924 - 28151991
Alignment:
| Q |
12 |
attatactttatctggtgagatttattgtcataaattaaagtttaactttgatatattgtaaacaaat |
79 |
Q |
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| T |
28151924 |
attatactttatctggtgagatttattgtcataaattaaagtttaactttgatatattgtaaacaaat |
28151991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 134 - 256
Target Start/End: Complemental strand, 8024359 - 8024237
Alignment:
| Q |
134 |
aattgtgcagcttggttacaagtgagtaatggaaatgttcctgtaacagcagtagtcaaaacaaatgaaggatttaaattttgtggtgtcatttttgctg |
233 |
Q |
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| T |
8024359 |
aattatgcagcttggatacaagtgagtgaggaaactgttcctgtcacagcagtagtcaaaacaaccaaaggatttaaatttggtggtgctatttttgctg |
8024260 |
T |
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| Q |
234 |
aatctaattgttggtctatgctt |
256 |
Q |
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| T |
8024259 |
agcctaattgttggtccatgctt |
8024237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 256
Target Start/End: Complemental strand, 21544771 - 21544649
Alignment:
| Q |
134 |
aattgtgcagcttggttacaagtgagtaatggaaatgttcctgtaacagcagtagtcaaaacaaatgaaggatttaaattttgtggtgtcatttttgctg |
233 |
Q |
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|||| |||||||||| ||||||||||| | | ||||| | ||||||||| | |||||||||| |||||||||||||||| |||||| ||||| ||||| |
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| T |
21544771 |
aattatgcagcttggatacaagtgagtgaggcgaatgtcctggtaacagcaatggtcaaaacaactgaaggatttaaatttggtggtgccatttatgctg |
21544672 |
T |
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| Q |
234 |
aatctaattgttggtctatgctt |
256 |
Q |
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| | |||||||||||||||||| |
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| T |
21544671 |
agccgaattgttggtctatgctt |
21544649 |
T |
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