View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16008_high_1 (Length: 734)
Name: NF16008_high_1
Description: NF16008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16008_high_1 |
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| [»] scaffold0907 (1 HSPs) |
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Alignment Details
Target: scaffold0907 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: scaffold0907
Description:
Target: scaffold0907; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 71 - 720
Target Start/End: Complemental strand, 3102 - 2455
Alignment:
| Q |
71 |
tcattcgggtcagagaaatcatcattgaaaggatttggaagagctggaaatgaaggtgtagctgtggagaaagattctgatgacccttatcttgattttc |
170 |
Q |
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| T |
3102 |
tcattcgggtcagagaaatcatcattgaaaggatttggaagagctggaaatgaaggagtagctgtggagaaagattctgatgacccttatcttgattttc |
3003 |
T |
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| Q |
171 |
gacattcaatgttgcagatgatattggagaatgagatatattctaaagatgatcttagagagcttttgaactgttttcttcagctgaattcgaaggaaca |
270 |
Q |
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| T |
3002 |
gacattcaatgttgcagatgatattggagaatgagatatattctaaagatgatcttagagagcttttgaactgttttcttcagctgaattcgaaggaaca |
2903 |
T |
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| Q |
271 |
tcatgggattattataagagcttttactgagatttggaatggagttttctctgttaagtctggtttttcatctgggtttcaccttaatcgtaactcacgt |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2902 |
tcatgggattattataagagcttttactgagatttggaatggagttttctctgttaagtctggtttttcatctgggtttcaccttaatcgtaactaacgt |
2803 |
T |
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| Q |
371 |
gacttctaggtcttgttctagatgatcgcgtggatattaactagttgtataaataagttctagtagtatttgactatgtgatgtaattggtatttggtaa |
470 |
Q |
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| T |
2802 |
gatttctagttctaattctagatggtcacgtggatattaactagttgtataaataagttctagtagtatttgactatgtgatgtaattggtatttggtaa |
2703 |
T |
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| Q |
471 |
gtatatgtctggaccgacgttgagtatgatagaatcacggtgtgttatccaaagtccggtaaaaattatattttgaagttggtctaaatatatgcgaagt |
570 |
Q |
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| T |
2702 |
gtatatgt-tggtccgacgatgagtatgatagaatcatggtgtgttgtccaaagttcggcaaaaatagtattttaaagtcggtctaaatatatgcgaagt |
2604 |
T |
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| Q |
571 |
tgctaactttgttgtagtattatgtttaaatcgacgatgaatttgataaaattaagttgtgttgtgtcgtaagtttgttaaatactgtattttgaagctt |
670 |
Q |
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| T |
2603 |
tgctaactttgttgtagtattatgtttaaattgacgatgaatttgataaaattaggtt-tgttgtgtcgtaagtttgttaaatactgtattttgaagctt |
2505 |
T |
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| Q |
671 |
caataagattatagtgtcaatgtgatttatcaaactcactatgaatttat |
720 |
Q |
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| T |
2504 |
caacacgattatagtgtcaatgtgatttatcgaactaactatgaatttat |
2455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 134 - 317
Target Start/End: Complemental strand, 42945876 - 42945693
Alignment:
| Q |
134 |
gtggagaaagattctgatgacccttatcttgattttcgacattcaatgttgcagatgatattggagaatgagatatattctaaagatgatcttagagagc |
233 |
Q |
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||||||||||||||||| || |||||||||||||| | ||||| ||| | || ||||||||||||||||| ||||| ||||||||||| |||||||||| |
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| T |
42945876 |
gtggagaaagattctgaagatccttatcttgatttcaggcattccatgcttcaaatgatattggagaatgaaatatactctaaagatgaccttagagagc |
42945777 |
T |
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| Q |
234 |
ttttgaactgttttcttcagctgaattcgaaggaacatcatgggattattataagagcttttactgagatttggaatggagttt |
317 |
Q |
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| T |
42945776 |
ttttgaactgttttcttcagctgaatgcaccttaccatcatggtgttattgttagagcttttactgagatttggaatggagttt |
42945693 |
T |
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