View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16008_high_11 (Length: 252)
Name: NF16008_high_11
Description: NF16008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16008_high_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 39 - 252
Target Start/End: Original strand, 3684292 - 3684505
Alignment:
| Q |
39 |
gcacatatcttcccatttcgctgacatgacagagaacaccttccaattctcatcaccatttttcaaaagtaacgacgaatctgaggtggacaacttgctg |
138 |
Q |
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| T |
3684292 |
gcacatgtcttcccatttcgctgacatgacagagaacgccttccaattctcatcaccatttttcaaaagtaacgacgaatctgaggtggacaacttgctg |
3684391 |
T |
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| Q |
139 |
agaatgaggnnnnnnnnccatggcacgtgacagcaacgacctttttagggtacatgtagccatagtcaaagtagccacgattgttgggttcattattctc |
238 |
Q |
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| T |
3684392 |
agaatgaagttttttttccatggcacgtgatagcaacgacctttttagggtacatgtacccatagtcatagtagccacgattgttgggttcattattctc |
3684491 |
T |
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| Q |
239 |
ccgtggtgaagtcc |
252 |
Q |
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| T |
3684492 |
ccgtggtgaagtcc |
3684505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 39 - 204
Target Start/End: Original strand, 3676119 - 3676292
Alignment:
| Q |
39 |
gcacatatcttcccatttcgctgacatgacagagaacaccttccaattctcatca-------ccatttttcaaaagtaacgacgaatctgaggtggacaa |
131 |
Q |
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| T |
3676119 |
gcacatatcttcccattttgctgacatgtcagagaacaccttccaattctcatgagtcatgaccacttttcaaaagtaatgacgaatctgaggtggacaa |
3676218 |
T |
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| Q |
132 |
cttgctgagaatgagg-nnnnnnnnccatggcacgtgacagcaacgacctttttagggtacatgtagccatagt |
204 |
Q |
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| T |
3676219 |
cttgctgagaatgaggttgttttttccatggcatgtgacaacaacgacctttttagggtacatgtagccatagt |
3676292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 9159180 - 9159140
Alignment:
| Q |
156 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
196 |
Q |
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| T |
9159180 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
9159140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 9171248 - 9171288
Alignment:
| Q |
156 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
196 |
Q |
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| T |
9171248 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
9171288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 7013266 - 7013306
Alignment:
| Q |
156 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
196 |
Q |
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| T |
7013266 |
ccatggcacgtaacaacaacgacctttttagggtacatgta |
7013306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 7026202 - 7026242
Alignment:
| Q |
156 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
196 |
Q |
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| T |
7026202 |
ccatggcacgtaacaacaacgacctttttagggtacatgta |
7026242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 7047252 - 7047293
Alignment:
| Q |
156 |
ccatggcacgtgacagcaacgacctttttagggtacatgtag |
197 |
Q |
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| T |
7047252 |
ccatggcacgtgacagcaatgaccttttcagggaacatgtag |
7047293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 7041918 - 7041950
Alignment:
| Q |
156 |
ccatggcacgtgacagcaacgacctttttaggg |
188 |
Q |
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| T |
7041918 |
ccatggcacgtgacagcaacgacctttataggg |
7041950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 9159277 - 9159225
Alignment:
| Q |
60 |
tgacatgacagagaacaccttccaattctcatcaccatttttcaaaagtaacg |
112 |
Q |
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| T |
9159277 |
tgacatgtcagggatcaccttccaatcctcatcaccacatttcaaaagtaacg |
9159225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 9171151 - 9171203
Alignment:
| Q |
60 |
tgacatgacagagaacaccttccaattctcatcaccatttttcaaaagtaacg |
112 |
Q |
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| T |
9171151 |
tgacatgtcagggatcaccttccaatcctcatcaccacatttcaaaagtaacg |
9171203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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