View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16008_high_13 (Length: 216)
Name: NF16008_high_13
Description: NF16008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16008_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 6081989 - 6082155
Alignment:
| Q |
22 |
cacaacacgttatcatattcattgttctctttactttctcaacttctatgttctaactaaccatttcttgcacctaaacttatgaatcttcaacttcatt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
6081989 |
cacaacacgttatcatattcattgttctcttcactttctcaacttctatgttctaactaaccatttcttgcacctaaacttatcaaccttcaacttcatt |
6082088 |
T |
|
| Q |
122 |
cttagaaggtcatgtaagtatggaataaattattttgttaaggtaaatattttccttgtgattatagttacattgtaatattt |
204 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6082089 |
cttagaaggtcatgtaagtatgg----------------aaggtaaatattttccttgtgattatagttacattgtaatattt |
6082155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University