View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16008_high_7 (Length: 312)
Name: NF16008_high_7
Description: NF16008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16008_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 8764527 - 8764244
Alignment:
| Q |
19 |
gattttatggaacttaatgagtaaccataaacaatagtggagaaaagaaatggaaatattaaaagagttgttaccaaaggaaatgaagccattgaa---- |
114 |
Q |
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| T |
8764527 |
gattttatggaacttaatgagtaaccataaacaatagtggagaaaagaaatggaaatattaaaagagttgttaccaaaggaaatgaagccattgaatgaa |
8764428 |
T |
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| Q |
115 |
aaattattttagggtttggtttgatgagaaatttagagaagggtttatgaggttttggtttgattatgagtgaggtttatgtccttgattttagtgcctt |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8764427 |
aaatgattttagggtttggtttgatgagaaatttagagaagggtttatgaggttttggtttgattatgagtgaggtttatgtccttgattttagtgcctt |
8764328 |
T |
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| Q |
215 |
tatatagag-gnnnnnnngtggtggttaacatgtaaactatttgagactgctcaccatgtcatacttttccaacttagcctatg |
297 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8764327 |
tatatagagaaaaaaaaagtggtggttaaaatgtaaactatttgagactgctcaccatgtcatacttttccaacttagcctatg |
8764244 |
T |
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