View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16008_low_13 (Length: 277)

Name: NF16008_low_13
Description: NF16008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16008_low_13
NF16008_low_13
[»] chr2 (20 HSPs)
chr2 (1-147)||(12006447-12006593)
chr2 (1-84)||(11987816-11987899)
chr2 (1-87)||(12012878-12012964)
chr2 (84-147)||(12019323-12019386)
chr2 (1-87)||(12019217-12019304)
chr2 (97-147)||(9291568-9291618)
chr2 (97-147)||(12012999-12013049)
chr2 (97-147)||(11987937-11987987)
chr2 (99-143)||(9364251-9364295)
chr2 (97-139)||(9274200-9274242)
chr2 (97-147)||(9315649-9315699)
chr2 (97-147)||(9320601-9320651)
chr2 (97-136)||(9295107-9295146)
chr2 (48-87)||(9315734-9315773)
chr2 (97-143)||(10352744-10352790)
chr2 (204-246)||(12006669-12006711)
chr2 (97-142)||(10335441-10335486)
chr2 (97-133)||(10341043-10341079)
chr2 (50-86)||(10371555-10371591)
chr2 (204-248)||(12006636-12006680)
[»] chr3 (1 HSPs)
chr3 (97-147)||(37462100-37462150)
[»] chr1 (5 HSPs)
chr1 (97-147)||(29453747-29453797)
chr1 (50-87)||(29443693-29443730)
chr1 (98-147)||(29443774-29443823)
chr1 (97-147)||(29422943-29422993)
chr1 (97-132)||(29468238-29468273)
[»] scaffold0667 (2 HSPs)
scaffold0667 (97-147)||(4075-4125)
scaffold0667 (50-87)||(4160-4197)
[»] chr4 (1 HSPs)
chr4 (97-143)||(26574530-26574576)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 12006447 - 12006593
Alignment:
Q  1 aaggggaatcattcaagcaagaccaaaagaaggtacttcttattgattatgtataagttaatatcaattcaatggacccatcatatgttaatgtatttga 100  Q
    |||| ||||| | ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12006447 aaggagaatcgtacaagcaagagcaagagaaggtacttcttattgattatgtataagttaatatcaattcaatggacccatcatatgttaatgtatttga 12006546  T
Q  101 attcttattataggacaaggattctctaattactctgaagtctctac 147  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||    
T  12006547 attcttattttaggacaaggattctctaattactttgaagtctctac 12006593  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 11987816 - 11987899
Alignment:
Q  1 aaggggaatcattcaagcaagaccaaaagaaggtacttcttattgattatgtataagttaatatcaattcaatggacccatcat 84  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11987816 aaggggaatcattcaagcaagaccaagagaaggtacttcttattgattatgtataagttaatatcaattcaatggacccatcat 11987899  T

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Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 12012878 - 12012964
Alignment:
Q  1 aaggggaatcattcaagcaagaccaaaagaaggtacttcttattgattatgtataagttaatatcaattcaatggacccatcatatg 87  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12012878 aaggggaatcattcaagcaagagcaagagaaggtacttcttattgattatgtataagttaatatcaattcaatggacccatcatatg 12012964  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 12019323 - 12019386
Alignment:
Q  84 tatgttaatgtatttgaattcttattataggacaaggattctctaattactctgaagtctctac 147  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12019323 tatgttaatgtattggaattcttattataggacaaggattctctaattactttgaagtctctac 12019386  T

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Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 12019217 - 12019304
Alignment:
Q  1 aaggggaatcattcaagcaagaccaaaagaaggtacttcttattgattatgtataagttaatat-caattcaatggacccatcatatg 87  Q
    |||| ||||| | |||| |||| ||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  12019217 aaggagaatcgtacaagaaagagcaagagaaggtacttcttattgattatgtataagttaacatccaattcaatggacccatcatatg 12019304  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 9291618 - 9291568
Alignment:
Q  97 ttgaattcttattataggacaaggattctctaattactctgaagtctctac 147  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9291618 ttgaattcttattataggacaaggattctctaattactttgaagtctctac 9291568  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 12012999 - 12013049
Alignment:
Q  97 ttgaattcttattataggacaaggattctctaattactctgaagtctctac 147  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12012999 ttgaattcttattataggacaaggattctctaattactttgaagtctctac 12013049  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 11987937 - 11987987
Alignment:
Q  97 ttgaattcttattataggacaaggattctctaattactctgaagtctctac 147  Q
    |||||||| |||||||||||||||||| |||||||||| ||||||||||||    
T  11987937 ttgaattcctattataggacaaggattttctaattactttgaagtctctac 11987987  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 9364295 - 9364251
Alignment:
Q  99 gaattcttattataggacaaggattctctaattactctgaagtct 143  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||    
T  9364295 gaattcttattataggacaaggagtctctaattactttgaagtct 9364251  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 9274242 - 9274200
Alignment:
Q  97 ttgaattcttattataggacaaggattctctaattactctgaa 139  Q
    |||||||||||||||||||||||||||| ||||||||| ||||    
T  9274242 ttgaattcttattataggacaaggattcactaattactttgaa 9274200  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 9315699 - 9315649
Alignment:
Q  97 ttgaattcttattataggacaaggattctctaattactctgaagtctctac 147  Q
    |||||||||||||||||||||||||||| ||||||||| | || |||||||    
T  9315699 ttgaattcttattataggacaaggattccctaattactttaaattctctac 9315649  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 9320651 - 9320601
Alignment:
Q  97 ttgaattcttattataggacaaggattctctaattactctgaagtctctac 147  Q
    ||||||| ||||||| |||||||||| ||||||||||| ||||||||||||    
T  9320651 ttgaatttttattatcggacaaggatactctaattactttgaagtctctac 9320601  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 9295107 - 9295146
Alignment:
Q  97 ttgaattcttattataggacaaggattctctaattactct 136  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  9295107 ttgaattcttattataggacaggggttctctaattactct 9295146  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 9315773 - 9315734
Alignment:
Q  48 tatgtataagttaatatcaattcaatggacccatcatatg 87  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  9315773 tatgtataagttaatgtcagttcaatggacccatcatatg 9315734  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 10352790 - 10352744
Alignment:
Q  97 ttgaattcttattataggacaaggattctctaattactctgaagtct 143  Q
    |||||||||||| |||||| |||||||||||||||||| ||| ||||    
T  10352790 ttgaattcttatcataggataaggattctctaattactttgacgtct 10352744  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 12006669 - 12006711
Alignment:
Q  204 gatttcaatgtatttgccaatgtttgtatgctgaatttcaatg 246  Q
    |||||||||||||||| |||||  |||||||||||||||||||    
T  12006669 gatttcaatgtatttgacaatgcgtgtatgctgaatttcaatg 12006711  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 10335486 - 10335441
Alignment:
Q  97 ttgaattcttattataggacaaggattctctaattactctgaagtc 142  Q
    |||||||||||| ||||||  |||||||||||||||||||| ||||    
T  10335486 ttgaattcttatcataggatgaggattctctaattactctggagtc 10335441  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 10341079 - 10341043
Alignment:
Q  97 ttgaattcttattataggacaaggattctctaattac 133  Q
    |||||||||||| |||||| |||||||||||||||||    
T  10341079 ttgaattcttatcataggataaggattctctaattac 10341043  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 10371591 - 10371555
Alignment:
Q  50 tgtataagttaatatcaattcaatggacccatcatat 86  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  10371591 tgtataagttaatatcagttcaatggatccatcatat 10371555  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 12006636 - 12006680
Alignment:
Q  204 gatttcaatgtatttgccaatgtttgtatgctgaatttcaatgta 248  Q
    |||||||||||||||| |||||  ||||||||| |||||||||||    
T  12006636 gatttcaatgtatttgacaatgcgtgtatgctggatttcaatgta 12006680  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 37462150 - 37462100
Alignment:
Q  97 ttgaattcttattataggacaaggattctctaattactctgaagtctctac 147  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  37462150 ttgaattcttgttataggacaaggattctctaattactttgaagtctctac 37462100  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 29453747 - 29453797
Alignment:
Q  97 ttgaattcttattataggacaaggattctctaattactctgaagtctctac 147  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  29453747 ttgaattcttattatagaacaaggattctctaattactttgaagtctctac 29453797  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 29443693 - 29443730
Alignment:
Q  50 tgtataagttaatatcaattcaatggacccatcatatg 87  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29443693 tgtataagttaatatcaattcaatggacccatcatatg 29443730  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 29443774 - 29443823
Alignment:
Q  98 tgaattcttattataggacaaggattctctaattactctgaagtctctac 147  Q
    ||||||||||| ||||||||||||||||||||||| | ||||||||||||    
T  29443774 tgaattcttatcataggacaaggattctctaattattttgaagtctctac 29443823  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 29422993 - 29422943
Alignment:
Q  97 ttgaattcttattataggacaaggattctctaattactctgaagtctctac 147  Q
    |||||||||||||||| ||||| ||||||||||||| | ||||||||||||    
T  29422993 ttgaattcttattatatgacaatgattctctaattattttgaagtctctac 29422943  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 132
Target Start/End: Original strand, 29468238 - 29468273
Alignment:
Q  97 ttgaattcttattataggacaaggattctctaatta 132  Q
    |||||||||||||||||||||| |||||||||||||    
T  29468238 ttgaattcttattataggacaatgattctctaatta 29468273  T

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Target: scaffold0667 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 4125 - 4075
Alignment:
Q  97 ttgaattcttattataggacaaggattctctaattactctgaagtctctac 147  Q
    ||||||||||||||||||| ||||||||| |||||||| |||| |||||||    
T  4125 ttgaattcttattataggaaaaggattctataattactttgaattctctac 4075  T

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Target: scaffold0667; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 4197 - 4160
Alignment:
Q  50 tgtataagttaatatcaattcaatggacccatcatatg 87  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  4197 tgtataagttaatatctgttcaatggacccatcatatg 4160  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 26574576 - 26574530
Alignment:
Q  97 ttgaattcttattataggacaaggattctctaattactctgaagtct 143  Q
    |||||||||||| |||||| |||||||||||||||||| ||| ||||    
T  26574576 ttgaattcttatcataggataaggattctctaattactttgacgtct 26574530  T

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