View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16008_low_2 (Length: 477)

Name: NF16008_low_2
Description: NF16008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16008_low_2
NF16008_low_2
[»] chr2 (2 HSPs)
chr2 (379-458)||(43428821-43428900)
chr2 (304-378)||(43428933-43429007)
[»] chr4 (1 HSPs)
chr4 (30-66)||(36661082-36661118)


Alignment Details
Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 379 - 458
Target Start/End: Complemental strand, 43428900 - 43428821
Alignment:
Q  379 attctcgacttaaatggtgggaattttatttgttcataaacaattttaaatgacaaattgtaggtgtctagttatctagc 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43428900 attctcgacttaaatggtgggaattttatttgttcataaacaattttaaatgagaaattgtaggtgtctagttatctagc 43428821  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 43429007 - 43428933
Alignment:
Q  304 cttcgggaggggttttcttgtaggtctggtattaagggtttcccatgcccctgttagtgttgtcatgaatttagt 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43429007 cttcgggaggggttttcttgtaggtctggtattaagggtttcccatgcccctgttagtgttgtcatgaatttagt 43428933  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 36661118 - 36661082
Alignment:
Q  30 tgtcttttgtttttgggagccttcatgaatcatttag 66  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  36661118 tgtcttttgttttcgggagccttcacgaatcatttag 36661082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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