View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16008_low_3 (Length: 461)
Name: NF16008_low_3
Description: NF16008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16008_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 14039756 - 14039306
Alignment:
| Q |
1 |
accctctgctctcaagattccaccggaaaattctcctgtgttaccgctgactgtgcttcctcgtccatagaatgtaatggaggaaacgctcaaccgccag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14039756 |
accctctgctctcaagattccaccggaaaattctcatgtgttaccggtgactgtgcttcctcgtccatagaatgtaatggaggaaacgctcaaccgccag |
14039657 |
T |
|
| Q |
101 |
ctacattagccgagtttacacttaatggtgcaaacggacttgatttcttcgacgttagtctcgtggacggttacaacctcccaatgatgatcgaaccaca |
200 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14039656 |
ctacattagccgagtttacacttaacggtgcaaacggacttgatttcttcgacgttagtctcgtggacggttacaacctcccaatgatgatcgaaccaca |
14039557 |
T |
|
| Q |
201 |
aggagcaaccggaggcggaaactgcatgacaacaggttgcatggtggatttgaacgcggcatgtccaaccgagttgaaagtgatgagtaatggcggaggt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14039556 |
aggagcaaccggaggcggaaactgcatgacaacaggttgcatggtggatttgaacgcggcatgtccaaccgagttgaaagtgatgagtaatggcggaggt |
14039457 |
T |
|
| Q |
301 |
gtagcgtgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14039456 |
gtagcgtgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcac |
14039357 |
T |
|
| Q |
401 |
agtttttcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatg |
451 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14039356 |
agtttttcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatg |
14039306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 18954727 - 18954277
Alignment:
| Q |
1 |
accctctgctctcaagattccaccggaaaattctcctgtgttaccgctgactgtgcttcctcgtccatagaatgtaatggaggaaacgctcaaccgccag |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
18954727 |
accctatgctctcaagattccaccggaaaattctcatgtgttactggcgactgtgcttcctccaccatagaatgtgttggaggaaacgctcaaccgccag |
18954628 |
T |
|
| Q |
101 |
ctacattagccgagtttacacttaatggtgcaaacggacttgatttcttcgacgttagtctcgtggacggttacaacctcccaatgatgatcgaaccaca |
200 |
Q |
| |
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| |||||||| |||||||||||||| || ||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||| |
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| T |
18954627 |
caacattagcagagtttacacttaacggcgcaggtggacttgatttcttcgacgttagtctcgttgacggttacaacctcccgttgttgatcaaaccacg |
18954528 |
T |
|
| Q |
201 |
aggagcaaccggaggcggaaactgcatgacaacaggttgcatggtggatttgaacgcggcatgtccaaccgagttgaaagtgatgagtaatggcggaggt |
300 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || | || |
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|
| T |
18954527 |
tggagcaaccgggggtggaaactgcatgacaacaggttgcatggtggatttgaacacggcgtgtccaaccgagttgaaagtgatgagtaacggaagcagt |
18954428 |
T |
|
| Q |
301 |
gtagcgtgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||| |
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| T |
18954427 |
gtagcgtgtaaaagcgcgtgtgaagcgtttggagatctgcaatattgttgtaatggcgcttacgctactccagatacatgcaagccaagttcgtactcac |
18954328 |
T |
|
| Q |
401 |
agtttttcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatg |
451 |
Q |
| |
|
| || || |||||||| ||||| || |||||||| || ||||||||||||| |
|
|
| T |
18954327 |
aattctttaagagtgcatgtccacgtgcttatagttatgcttatgatgatg |
18954277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 307 - 451
Target Start/End: Complemental strand, 31945163 - 31945019
Alignment:
| Q |
307 |
tgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcacagtttt |
406 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||| |||||||| | ||||||||| | |||| | || || ||||||||||||||||| ||||| | |
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|
| T |
31945163 |
tgtaaaagcgcgtgcgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactccgcagacttgtaagccaagttcatactcgcagttct |
31945064 |
T |
|
| Q |
407 |
tcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatg |
451 |
Q |
| |
|
||||||| || ||||| |||||||||||||| ||||||||||||| |
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|
| T |
31945063 |
tcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatg |
31945019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 136 - 451
Target Start/End: Original strand, 8797997 - 8798324
Alignment:
| Q |
136 |
ggacttgatttcttcgacgttagtctcgtggacggttacaacctcccaatgatgatcgaaccacaaggagcaaccggaggcggaaactgcatgacaacag |
235 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||| || | |||||| ||||||||||||| | |||| | |
|
|
| T |
8797997 |
ggacttgatttcttcgacgttagtctcgtcgacggttacaatctcccaatattaatcgaaccacacggtgaaaccggcggcggaaactgcacggcaacgg |
8798096 |
T |
|
| Q |
236 |
gttgcatggtggatttgaacgcggcatgtccaaccgagttgaaagtgatgagtaat------ggcggag------gtgtagcgtgtaaaagcgcgtgtga |
323 |
Q |
| |
|
||||| || || || |||||||| ||||| | |||||||||||||| |||| | ||||| | | || |||||||||||||||||||| |
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|
| T |
8798097 |
gttgctccgtcgacttaaacgcggcgtgtccgatggagttgaaagtgataagtagtaataacggcggtgaagagagcgtggcgtgtaaaagcgcgtgtga |
8798196 |
T |
|
| Q |
324 |
agcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcacagtttttcaagagtgcttgtcct |
423 |
Q |
| |
|
||||||||||||||| |||||||| || ||||||||||| | ||| || |||| || || |||||||| ||||| |||||||| |||||||| ||||| |
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|
| T |
8798197 |
agcgtttggggatccgcaatattgctgcagtggcgcttatggttccccggatacgtgtaaaccaagttcctactcgcagttttttaagagtgcgtgtcca |
8798296 |
T |
|
| Q |
424 |
cgcgcttatagctacgcttatgatgatg |
451 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
8798297 |
cgcgcttatagttacgcttatgatgatg |
8798324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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