View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16008_low_4 (Length: 410)
Name: NF16008_low_4
Description: NF16008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16008_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 149 - 267
Target Start/End: Original strand, 37127649 - 37127767
Alignment:
| Q |
149 |
acctcttcttccctctcctaagcaaagcaataatgtcggatgctaaaacccaaatcgaatctctcaggaaatgggtcgttgaacacaaactccgtactgt |
248 |
Q |
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| T |
37127649 |
acctcttcttccctctcctaagcaaagcaataatgtcggatgctaaaacccaaatcgaatctctcaggaaatgggtcgttgaacacaaactccgtactgt |
37127748 |
T |
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| Q |
249 |
tggtatatttccaaatcaa |
267 |
Q |
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| T |
37127749 |
tggtatatttccaaatcaa |
37127767 |
T |
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Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 37127528 - 37127611
Alignment:
| Q |
18 |
actagttccgccgtgtcatcaaccaacgaacgaagcaggtttacaattacaacttttcatttgatttgtgactctactttttcc |
101 |
Q |
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| T |
37127528 |
actagttccgccgcgtcatcaaccaacgaacgaagcaggtttacaattacaacttgtcatttgatttgtgactctactttttcc |
37127611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 332 - 396
Target Start/End: Original strand, 37127832 - 37127896
Alignment:
| Q |
332 |
gatcaggttgtttgtggcttagcggtattacgggttcaattgcgtataattggtctcgtcctaac |
396 |
Q |
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| T |
37127832 |
gatcaggttgtttgtggcttagcggtattacgggttcaattgcttataattggtctcgtcctaac |
37127896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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