View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16008_low_6 (Length: 401)

Name: NF16008_low_6
Description: NF16008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16008_low_6
NF16008_low_6
[»] chr1 (15 HSPs)
chr1 (18-387)||(28326334-28326703)
chr1 (18-378)||(21158853-21159212)
chr1 (201-300)||(28231692-28231791)
chr1 (212-290)||(6326535-6326613)
chr1 (201-286)||(28239385-28239470)
chr1 (202-303)||(47569320-47569421)
chr1 (201-300)||(14508604-14508703)
chr1 (201-296)||(24621565-24621660)
chr1 (201-287)||(23787215-23787301)
chr1 (84-141)||(14508760-14508817)
chr1 (91-167)||(6326673-6326749)
chr1 (95-140)||(4872625-4872670)
chr1 (96-141)||(12535422-12535467)
chr1 (96-141)||(12532944-12532989)
chr1 (81-169)||(28231575-28231663)
[»] chr2 (3 HSPs)
chr2 (213-360)||(16375392-16375539)
chr2 (84-141)||(9066367-9066424)
chr2 (87-136)||(9068553-9068602)
[»] chr3 (2 HSPs)
chr3 (201-300)||(47924693-47924792)
chr3 (84-137)||(47924865-47924918)
[»] chr5 (2 HSPs)
chr5 (212-298)||(1718090-1718176)
chr5 (84-141)||(1717968-1718025)
[»] chr7 (1 HSPs)
chr7 (213-303)||(3698093-3698183)


Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 28326334 - 28326703
Alignment:
Q  18 aaaccaagcttatgatttatattctgaaatgaagcttcatggtaacaatgtctcacctaattctcacacatatcatcatctaatctttggctattgtatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28326334 aaaccaagcttatgatttatattctgaaatgaagcttcatggtaacaatgtctcacctaattctcacacatatcatcatctaatctttggctattgtatc 28326433  T
Q  118 atcggtcaatttaaacaagcaattcgtttatttaaagagttcaaggcatcaataaacatccgtccatgtcttcttactatagcagttaccgaacgagagg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28326434 atcggtcaatttaaacaagcaattcgtttatttaaagagttcaaggcatcaataaacatccgtccatgtcttcttactatagcagttaccgaaagagagg 28326533  T
Q  218 tgaaatctgctaaaagtgtagtagctgtcatgataaaaggtggtctcagacctaatgttgctagttatcactcggttattgatagattgtacaaaggtca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28326534 tgaaatctgctaaaagtgtagtagctgtcatgataaaaggtggtctcagacctaatgttgctagttatcactcggttattgatagattgtacaaaggtca 28326633  T
Q  318 atcacgaagaagagttatgaataagattgcacaaaaggtggatacattggtacgccccaaaatttttccc 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28326634 atcacgaagaagagttatgaataagattgcacaaaaggtggatacattggtacgccccaaaatttttccc 28326703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 21159212 - 21158853
Alignment:
Q  18 aaaccaagcttatgatttatattctgaaatgaagcttcatggtaacaatgtctcacctaattctcacacatatcatcatctaatctttggctattgtatc 117  Q
    ||||||||| ||||||||||||||||||||    ||||||| |||||| ||||||||||||||  |||| ||||||||| || | |||| |||||| |||    
T  21159212 aaaccaagcctatgatttatattctgaaatt---cttcatgttaacaacgtctcacctaattccgacacgtatcatcatttagtttttg-ctattgcatc 21159117  T
Q  118 atcggtcaatttaaacaagcaattcgtttatttaaagagttcaaggcatcaataaacatccgtccatgtcttcttactatagcagttaccgaacgagagg 217  Q
     || |||| ||||||||| ||||  |||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||    
T  21159116 gtcagtcagtttaaacaatcaatcggtttctttaaagaattcaaggcatcaataaacatccgtccatgtcttcttactttagcagttaccaaacaagagg 21159017  T
Q  218 tgaaatctgctaaaagtgtagtagctgtcatgat---aaaaggtggtctcagacctaatgttgctagttatcactcggttattgatagattgtacaaagg 314  Q
    |||||||| ||||||||||||||||||||| |||   ||||| |||| | | ||||||||||| ||| |||||||| ||||||||   ||||||||||||    
T  21159016 tgaaatcttctaaaagtgtagtagctgtcacgataacaaaagatggtgtgaaacctaatgttgttagctatcactcagttattgaggaattgtacaaagg 21158917  T
Q  315 tcaatcacgaagaagagttatgaataagattgcacaaaaggtggatacattggtacgccccaaa 378  Q
    |  ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  21158916 tggatcgcgaagaagagttatgaataagattgcacaaaaggttgatacattggtacgtcccaaa 21158853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 201 - 300
Target Start/End: Original strand, 28231692 - 28231791
Alignment:
Q  201 agttaccgaacgagaggtgaaatctgctaaaagtgtagtagctgtcatgataaaaggtggtctcagacctaatgttgctagttatcactcggttattgat 300  Q
    |||||||||| ||||||||| ||||||||||||||||| |||| | ||||||||||||||| ||| |||||| ||||||||||| ||||| |||||||||    
T  28231692 agttaccgaaggagaggtgagatctgctaaaagtgtagcagctatgatgataaaaggtggtgtcaaacctaacgttgctagttaccactcagttattgat 28231791  T

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Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 290
Target Start/End: Complemental strand, 6326613 - 6326535
Alignment:
Q  212 gagaggtgaaatctgctaaaagtgtagtagctgtcatgataaaaggtggtctcagacctaatgttgctagttatcactc 290  Q
    ||||||| ||||||||||||| || ||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||    
T  6326613 gagaggtcaaatctgctaaaactgcagtagctgtgatgataaaaggcggtctcaaacctaatgttgctagttatcactc 6326535  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 28239385 - 28239470
Alignment:
Q  201 agttaccgaacgagaggtgaaatctgctaaaagtgtagtagctgtcatgataaaaggtggtctcagacctaatgttgctagttatc 286  Q
    ||||||||||||||| ||||||||||||| |||||| | |||||| ||||||||||||||| ||| ||||||||||||| ||||||    
T  28239385 agttaccgaacgagatgtgaaatctgctagaagtgtggcagctgtgatgataaaaggtggtgtcaaacctaatgttgcttgttatc 28239470  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 303
Target Start/End: Original strand, 47569320 - 47569421
Alignment:
Q  202 gttaccgaacgagaggtgaaatctgctaaaagtgtagtagctgtcatgataaaaggtggtctcagacctaatgttgctagttatcactcggttattgata 301  Q
    |||||||||| ||||||||||||||||||| ||| ||  ||| | |||||||||||| || ||| |||||||| ||||||||||||||| ||||||| ||    
T  47569320 gttaccgaacaagaggtgaaatctgctaaatgtgcagctgctttgatgataaaaggtagtgtcaaacctaatgctgctagttatcactctgttattggta 47569419  T
Q  302 ga 303  Q
    ||    
T  47569420 ga 47569421  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 201 - 300
Target Start/End: Complemental strand, 14508703 - 14508604
Alignment:
Q  201 agttaccgaacgagaggtgaaatctgctaaaagtgtagtagctgtcatgataaaaggtggtctcagacctaatgttgctagttatcactcggttattgat 300  Q
    |||||| ||| ||||||||||| |||||||||||  | | ||| | ||||||||||||||| ||| ||||| ||||||||||| ||||||||| ||||||    
T  14508703 agttactgaaggagaggtgaaagctgctaaaagtacaatcgctctaatgataaaaggtggtgtcaaacctattgttgctagttttcactcggtgattgat 14508604  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 201 - 296
Target Start/End: Complemental strand, 24621660 - 24621565
Alignment:
Q  201 agttaccgaacgagaggtgaaatctgctaaaagtgtagtagctgtcatgataaaaggtggtctcagacctaatgttgctagttatcactcggttat 296  Q
    ||||||||||| |||||||||||||| |||||||| || | || | |||||||||| |||| ||| ||||||||||||| ||||||| || |||||    
T  24621660 agttaccgaacaagaggtgaaatctgttaaaagtgcagcaactttgatgataaaagctggtgtcaaacctaatgttgcttgttatcaatctgttat 24621565  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 23787215 - 23787301
Alignment:
Q  201 agttaccgaacgagaggtgaaatctgctaaaagtgtagtagctgtcatgataaaaggtggtctcagacctaatgttgctagttatca 287  Q
    ||||||||||| |||||||||||||| |||||||| || | || |  ||||||||| |||| ||| ||||||||||||| |||||||    
T  23787215 agttaccgaacaagaggtgaaatctgttaaaagtgcagcaactttggtgataaaagctggtgtcaaacctaatgttgcttgttatca 23787301  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 14508817 - 14508760
Alignment:
Q  84 cacatatcatcatctaatctttggctattgtatcatcggtcaatttaaacaagcaatt 141  Q
    |||||||||| ||||||||| ||| ||||| ||| |||||||||||||||||||||||    
T  14508817 cacatatcataatctaatctatggttattgcatcgtcggtcaatttaaacaagcaatt 14508760  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 6326749 - 6326673
Alignment:
Q  91 catcatctaatctttggctattgtatcatcggtcaatttaaacaagcaattcgtttatttaaagagttcaaggcatc 167  Q
    ||||||||||||| ||||||||| ||| ||||||||||| |||||||||||   || |||||| | |||||||||||    
T  6326749 catcatctaatctatggctattgcatcctcggtcaatttgaacaagcaattgccttgtttaaaaaattcaaggcatc 6326673  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 4872625 - 4872670
Alignment:
Q  95 atctaatctttggctattgtatcatcggtcaatttaaacaagcaat 140  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  4872625 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 4872670  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 12535467 - 12535422
Alignment:
Q  96 tctaatctttggctattgtatcatcggtcaatttaaacaagcaatt 141  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
T  12535467 tctaatctatggctattgcatcaccggtcaatttaaacaagcaatt 12535422  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 12532989 - 12532944
Alignment:
Q  96 tctaatctttggctattgtatcatcggtcaatttaaacaagcaatt 141  Q
    |||||||| ||||||||  |||| ||||||||||||||||||||||    
T  12532989 tctaatctatggctattacatcaacggtcaatttaaacaagcaatt 12532944  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 169
Target Start/End: Original strand, 28231575 - 28231663
Alignment:
Q  81 tcacacatatcatcatctaatctttggctattgtatcatcggtcaatttaaacaagcaattcgtttatttaaagagttcaaggcatcaa 169  Q
    ||||||||||   |||||||||| ||| ||||| ||| |||||||||||||| ||||| |||| || ||||  || ||| |||||||||    
T  28231575 tcacacatatagacatctaatctatggttattgcatcctcggtcaatttaaagaagcacttcgcttctttattgaattcgaggcatcaa 28231663  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 360
Target Start/End: Original strand, 16375392 - 16375539
Alignment:
Q  213 agaggtgaaatctgctaaaagtgtagtagctgtcatgataaaaggtggtctcagacctaatgttgctagttatcactcggttattgatagattgtacaaa 312  Q
    |||||| ||||||  |||||||| || |  ||| ||||||||||||||| ||| |||||||| | |||||||||||||  |||| |||||| | ||||||    
T  16375392 agaggtaaaatctaataaaagtgcagcacatgtgatgataaaaggtggtgtcaaacctaatgcttctagttatcactctattatcgatagactatacaaa 16375491  T
Q  313 ggtcaatcacgaagaagagttatgaataagattgcacaaaaggtggat 360  Q
    ||   |||| ||||    ||||||| ||||||| ||||||||||||||    
T  16375492 gggggatcaagaagtgttgttatgattaagattacacaaaaggtggat 16375539  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 9066367 - 9066424
Alignment:
Q  84 cacatatcatcatctaatctttggctattgtatcatcggtcaatttaaacaagcaatt 141  Q
    |||||||||| ||||||||| ||| ||||||||| ||||||||||||||| |||||||    
T  9066367 cacatatcataatctaatctatggttattgtatcgtcggtcaatttaaaccagcaatt 9066424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 9068553 - 9068602
Alignment:
Q  87 atatcatcatctaatctttggctattgtatcatcggtcaatttaaacaag 136  Q
    ||||||| ||||||||| ||||||||| ||| | ||||||||||||||||    
T  9068553 atatcataatctaatctatggctattgcatcgttggtcaatttaaacaag 9068602  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 300
Target Start/End: Complemental strand, 47924792 - 47924693
Alignment:
Q  201 agttaccgaacgagaggtgaaatctgctaaaagtgtagtagctgtcatgataaaaggtggtctcagacctaatgttgctagttatcactcggttattgat 300  Q
    |||||| ||| ||||||| |||  |||||||| |||||| ||||| ||| ||||| | ||| ||| |||||||||||| ||||||||||| || ||||||    
T  47924792 agttactgaaggagaggttaaagatgctaaaactgtagtggctgtgatggtaaaatgcggtgtcaaacctaatgttgccagttatcactcagtgattgat 47924693  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 47924918 - 47924865
Alignment:
Q  84 cacatatcatcatctaatctttggctattgtatcatcggtcaatttaaacaagc 137  Q
    |||||||||| ||||||||  ||||||||| ||||||||| |||||||||||||    
T  47924918 cacatatcattatctaatcaatggctattgcatcatcggtgaatttaaacaagc 47924865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 1718090 - 1718176
Alignment:
Q  212 gagaggtgaaatctgctaaaagtgtagtagctgtcatgataaaaggtggtctcagacctaatgttgctagttatcactcggttattg 298  Q
    ||||||||||| |||||||||||  |   ||| | ||||||||||||||| ||| ||||| ||||||| ||||||||||||| ||||    
T  1718090 gagaggtgaaagctgctaaaagtacaactgctcttatgataaaaggtggtgtcaaacctattgttgctggttatcactcggtgattg 1718176  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 1717968 - 1718025
Alignment:
Q  84 cacatatcatcatctaatctttggctattgtatcatcggtcaatttaaacaagcaatt 141  Q
    |||||||||| ||||||||| ||| ||||| ||| | |||||||||||||||||||||    
T  1717968 cacatatcataatctaatctatggttattgcatcgttggtcaatttaaacaagcaatt 1718025  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 303
Target Start/End: Complemental strand, 3698183 - 3698093
Alignment:
Q  213 agaggtgaaatctgctaaaagtgtagtagctgtcatgataaaaggtggtctcagacctaatgttgctagttatcactcggttattgataga 303  Q
    |||||||||||||||||||| ||||| |||| | | |||||||||| |||||| |||| ||  | |||||||| ||||  |||||| ||||    
T  3698183 agaggtgaaatctgctaaaaatgtagcagctatgacgataaaaggttgtctcaaacctcattctactagttattactctattattggtaga 3698093  T

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