View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16008_low_7 (Length: 345)

Name: NF16008_low_7
Description: NF16008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16008_low_7
NF16008_low_7
[»] chr6 (18 HSPs)
chr6 (10-331)||(4626619-4626940)
chr6 (12-298)||(4298997-4299283)
chr6 (12-298)||(4259330-4259616)
chr6 (12-285)||(4622810-4623083)
chr6 (18-298)||(4514297-4514577)
chr6 (10-301)||(4602460-4602751)
chr6 (46-295)||(4255800-4256049)
chr6 (124-272)||(4557907-4558055)
chr6 (54-306)||(4506569-4506821)
chr6 (54-284)||(4517033-4517263)
chr6 (141-283)||(4617824-4617966)
chr6 (6-214)||(4266426-4266635)
chr6 (18-126)||(4481369-4481477)
chr6 (187-274)||(4612918-4613005)
chr6 (56-162)||(3172455-3172561)
chr6 (6-214)||(4458258-4458467)
chr6 (191-274)||(4593083-4593166)
chr6 (237-298)||(4462018-4462079)
[»] scaffold0477 (1 HSPs)
scaffold0477 (12-332)||(3831-4151)
[»] scaffold0288 (1 HSPs)
scaffold0288 (50-288)||(2904-3142)
[»] chr8 (2 HSPs)
chr8 (12-273)||(20863044-20863305)
chr8 (172-274)||(16685486-16685588)
[»] chr5 (2 HSPs)
chr5 (12-152)||(24107045-24107188)
chr5 (6-223)||(24103662-24103880)
[»] chr7 (1 HSPs)
chr7 (15-147)||(3087093-3087225)


Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 10 - 331
Target Start/End: Original strand, 4626619 - 4626940
Alignment:
Q  10 gcaaaggtccaatggtatatacagaaaggaatgtagaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgc 109  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4626619 gcaaaggtccaatggtatatacagaaaggaacgtagaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgc 4626718  T
Q  110 tctgtgaaatctatctgccgcttcaatgagaaattctaccatgacatcattagtatttgttgtccttataaagttaagaaggtccttcagccgaaagttc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4626719 tctgtgaaatctatctgccgcttcaatgagaaattctaccatgacatcattaggatttgttgtccttataaagttaagaaggtccttcagccgaaagttc 4626818  T
Q  210 tgcaatccgggaatacaatctagtttggtgtctaaatatccatttgtcaaataagtctcatctgcttttcataattacacaagtcaatatctcgaaactt 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4626819 tgcaatccgggaatacaatctagtttggtgtctaaatatccatttgtcaaataagtctcatctgcttttcataattacacaagtcaatatcttgaaactt 4626918  T
Q  310 gatttaagtatagagagataga 331  Q
    ||| ||||||||||||||||||    
T  4626919 gatataagtatagagagataga 4626940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 12 - 298
Target Start/End: Complemental strand, 4299283 - 4298997
Alignment:
Q  12 aaaggtccaatggtatatacagaaaggaatgtagaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctc 111  Q
    ||||||||||| ||||||| |||| ||||  |||||||||| |||||||||||||||| |||||||||||| ||||| || ||||||||||| ||||||     
T  4299283 aaaggtccaatagtatataaagaagggaacatagaatagagagcattcattacatcactctcaagttcatcataagtattaaaaacaatagcagatgctt 4299184  T
Q  112 tgtgaaatctatctgccgcttcaatgagaaattctaccatgacatcattagtatttgttgtccttataaagttaagaaggtccttcagccgaaagttctg 211  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||| | ||||||  |||||||||||| |   || || ||||  |||||||||||    
T  4299183 tgtgaaatctatctgccgcttcaatggcaaattctaccatgacatcatttggatttgtactccttataaagtcagttagatctttcaatcgaaagttctg 4299084  T
Q  212 caatccgggaatacaatctagtttggtgtctaaatatccatttgtcaaataagtctcatctgcttttcataattacacaagtcaata 298  Q
    |||||| |||||||| ||||||||| ||||||||||||| |||||||||||| |||||||||||| ||||||||| | |||||||||    
T  4299083 caatcctggaatacagtctagtttgatgtctaaatatccgtttgtcaaataactctcatctgcttgtcataattatagaagtcaata 4298997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 298
Target Start/End: Complemental strand, 4259616 - 4259330
Alignment:
Q  12 aaaggtccaatggtatatacagaaaggaatgtagaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctc 111  Q
    ||||||||||| | ||||| |||| ||||  ||||||||||| ||||||||||||||| |||||||||||| |||||||| ||||| ||||| |||||||    
T  4259616 aaaggtccaatagcatataaagaagggaacatagaatagagcacattcattacatcactctcaagttcatcataagtgttaaaaacgatagctgatgctc 4259517  T
Q  112 tgtgaaatctatctgccgcttcaatgagaaattctaccatgacatcattagtatttgttgtccttataaagttaagaaggtccttcagccgaaagttctg 211  Q
    |   ||||| |||||||||||| |||| ||| ||||||||||||||||| | || |||  ||||||||||||   | |  | ||| ||| |||||||||     
T  4259516 tacaaaatccatctgccgcttccatgaaaaaatctaccatgacatcatttggatctgtaatccttataaagtcgggcaaatgctttagctgaaagttctt 4259417  T
Q  212 caatccgggaatacaatctagtttggtgtctaaatatccatttgtcaaataagtctcatctgcttttcataattacacaagtcaata 298  Q
    |||||| |||| ||| |||| |||||| || | |||||||||||| | |||  ||| |||||||| ||||||||||| |||||||||    
T  4259416 caatccaggaacacagtctactttggtatccagatatccatttgttagatagctcttatctgcttgtcataattacaaaagtcaata 4259330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 12 - 285
Target Start/End: Original strand, 4622810 - 4623083
Alignment:
Q  12 aaaggtccaatggtatatacagaaaggaatgtagaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctc 111  Q
    |||||||||| |||||| | |||  ||||  | |||||||||||||||||  |||||  |||||||||||  ||||| || |||| |||||| || | |     
T  4622810 aaaggtccaacggtatacaaagatgggaacattgaatagagcgcattcatcgcatcagtctcaagttcattataagtattaaaaataatagcagaggatt 4622909  T
Q  112 tgtgaaatctatctgccgcttcaatgagaaattctaccatgacatcattagtatttgttgtccttataaagttaagaaggtccttcagccgaaagttctg 211  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||| |  | |||  |||||||||||| | | |  ||||| | |||||||||||     
T  4622910 tgtgaaatcgttctgccgcttcaatgagaaattctaccatgacatcatttggctctgtaatccttataaagtcaggcaaatcctttaaccgaaagttctt 4623009  T
Q  212 caatccgggaatacaatctagtttggtgtctaaatatccatttgtcaaataagtctcatctgcttttcataatt 285  Q
    |||||| |||| ||| |||| || |||||| | |||||||||||||| |||  ||| ||||||||  |||||||    
T  4623010 caatccaggaacacagtctacttcggtgtccagatatccatttgtcagatagctcttatctgcttggcataatt 4623083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 4514577 - 4514297
Alignment:
Q  18 ccaatggtatatacagaaaggaatgtagaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctctgtgaa 117  Q
    |||||||| |||| |||| |||   ||||||| || |||||||| ||||||| |||||| ||||   |||| || |||| |||||| || ||||| ||||    
T  4514577 ccaatggtgtatagagaagggagcatagaataaagagcattcataacatcactctcaagatcattagaagtatttaaaaaaatagcagaagctctatgaa 4514478  T
Q  118 atctatctgccgcttcaatgagaaattctaccatgacatcattagtatttgttgtccttataaagttaagaaggtccttcagccgaaagttctgcaatcc 217  Q
     ||||||| ||  ||||| || |||||||| ||| | |||||||| || |||||||| |||||| | | ||||||||||||| | ||||||  |||| ||    
T  4514477 gtctatctaccatttcaaagataaattctaacatcaaatcattagcatctgttgtccgtataaaatcaggaaggtccttcagtctaaagtttcgcaaacc 4514378  T
Q  218 gggaatacaatctagtttggtgtctaaatatccatttgtcaaataagtctcatctgcttttcataattacacaagtcaata 298  Q
     ||||| || || | ||| ||||| ||||||||||||||||||||| |||||||||| | |||||||| || |||| ||||    
T  4514377 tggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcatatcataattgcaaaagtaaata 4514297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 301
Target Start/End: Original strand, 4602460 - 4602751
Alignment:
Q  10 gcaaaggtccaatggtatatacagaaaggaatgtagaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgc 109  Q
    |||||||||| || ||||||| |||| ||||  ||||||| || |||||||||||||||| ||||||||||| |||||| || |||| |||||  ||  |    
T  4602460 gcaaaggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaatagtagagtc 4602559  T
Q  110 tctgtgaaatctatctgccgcttcaatgagaaattctaccatgacatcattagtatttgttgtccttataaagttaagaaggtccttcagccgaaagttc 209  Q
    ||| | ||||||||||||   |||||  |  ||||||||||| | |||||| | || ||||||||| ||| ||| ||||| |||||||| |||||||||     
T  4602560 tctattaaatctatctgcaatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtccttcaaccgaaagttt 4602659  T
Q  210 tgcaatccgggaatacaatctagtttggtgtctaaatatccatttgtcaaataagtctcatctgcttttcataattacacaagtcaatatct 301  Q
    | ||| || ||||| ||||||| ||| || || ||| |||||||||| | |||| | |||||||| | ||||||  ||| |||| |||||||    
T  4602660 ttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataagcacagaagttaatatct 4602751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 295
Target Start/End: Complemental strand, 4256049 - 4255800
Alignment:
Q  46 aatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctctgtgaaatctatctgccgcttcaatgagaaattc 145  Q
    ||||||| ||||||| |||||| | |||||||||||  |||||||| ||||||||||| || ||||| |||||   || |||||||||||||| ||||||    
T  4256049 aatagagagcattcaatacatcgctctcaagttcattataagtgttaaaaacaatagcagaggctctatgaaaatgatttgccgcttcaatgaaaaattc 4255950  T
Q  146 taccatgacatcattagtatttgttgtccttataaagttaagaaggtccttcagccgaaagttctgcaatccgggaatacaatctagtttggtgtctaaa 245  Q
    ||||||   ||||||    | |||  |||||||||||| | | |  ||||| ||||| ||||||| |||||| |||| |||||||| |||||| || | |    
T  4255949 taccatagaatcattttggtctgtaatccttataaagtcaggtaaatcctttagccggaagttcttcaatccaggaacacaatctactttggtatccaga 4255850  T
Q  246 tatccatttgtcaaataagtctcatctgcttttcataattacacaagtca 295  Q
    |||||||| ||||  ||  ||| |||||||| ||||||||||| ||||||    
T  4255849 tatccattcgtcaggtagctcttatctgcttgtcataattacaaaagtca 4255800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 124 - 272
Target Start/End: Original strand, 4557907 - 4558055
Alignment:
Q  124 ctgccgcttcaatgagaaattctaccatgacatcattagtatttgttgtccttataaagttaagaaggtccttcagccgaaagttctgcaatccgggaat 223  Q
    |||| ||||||| || ||||||||||||   |||||| |||| |||  |||||||||||| | | || |||||||| ||||||||||||||||| |||||    
T  4557907 ctgctgcttcaacgataaattctaccatcgaatcatttgtatctgtaatccttataaagtcaggcagatccttcagtcgaaagttctgcaatcctggaat 4558006  T
Q  224 acaatctagtttggtgtctaaatatccatttgtcaaataagtctcatct 272  Q
    |||||| | ||| ||||| |||||||| ||||||| |||| ||||||||    
T  4558007 acaatccactttagtgtccaaatatccgtttgtcagataactctcatct 4558055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 306
Target Start/End: Original strand, 4506569 - 4506821
Alignment:
Q  54 gcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctctgtgaaatctatctgccgcttcaatgagaaattctaccatga 153  Q
    |||||||  |||| || |||||||||||   |||| |||| ||||||||  || ||||| |||||| | ||||| |||||||| | |||||||| | | |    
T  4506569 gcattcagaacattactctcaagttcattagaagtattgagaacaatagaagaggctctatgaaatgtttctgctgcttcaataataaattctatcctca 4506668  T
Q  154 catcattagtatttgttgtccttataaagttaagaaggtccttcagccgaaagttctgcaatccgggaatacaatctagtttggtgtctaaatatccatt 253  Q
     ||| |||| || ||||||||||||||| | | |||| || ||||| | ||||||   ||| || ||||| || ||||  || ||||| |||||||||||    
T  4506669 aatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttctcaaacctggaatccagtctaccttagtgtccaaatatccatt 4506768  T
Q  254 tgtcaaataagtctcatctgcttttcataattacacaagtcaatatctcgaaa 306  Q
    ||| | |||| |||||||||| | ||||||||||| |||| ||| ||| ||||    
T  4506769 tgttagataactctcatctgcatatcataattacaaaagttaatgtcttgaaa 4506821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 284
Target Start/End: Original strand, 4517033 - 4517263
Alignment:
Q  54 gcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctctgtgaaatctatctgccgcttcaatgagaaattctaccatga 153  Q
    ||||| |||||||||  ||||||||||||  |||| |||||||||||||     |||   ||||  ||||| ||||||||||||| ||||| || ||| |    
T  4517033 gcatttattacatcattctcaagttcatcagaagtattgaaaacaatagaattagcttcatgaaccctatcggccgcttcaatgataaattttatcatta 4517132  T
Q  154 catcattagtatttgttgtccttataaagttaagaaggtccttcagccgaaagttctgcaatccgggaatacaatctagtttggtgtctaaatatccatt 253  Q
     |||||||| ||  || || |||||||||| | | |||||||| || | ||||||   ||| || ||||| || || | ||| ||||| |||||||||||    
T  4517133 tatcattaggatcagtagttcttataaagtcaggcaggtcctttagtctaaagtttcccaaacctggaatccagtcaactttagtgtccaaatatccatt 4517232  T
Q  254 tgtcaaataagtctcatctgcttttcataat 284  Q
    |||||||||| |||||||||| | |||||||    
T  4517233 tgtcaaataactctcatctgcatatcataat 4517263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 283
Target Start/End: Original strand, 4617824 - 4617966
Alignment:
Q  141 aattctaccatgacatcattagtatttgttgtccttataaagttaagaaggtccttcagccgaaagttctgcaatccgggaatacaatctagtttggtgt 240  Q
    ||||||| ||| | |||||| | |||||||||||| ||||||| ||  | |||||||| ||||||||| | ||| |||||||| ||||||| ||| || |    
T  4617824 aattctaacataatatcatttggatttgttgtcctgataaagtcaacgatgtccttcaaccgaaagtttttcaaaccgggaatccaatctactttagttt 4617923  T
Q  241 ctaaatatccatttgtcaaataagtctcatctgcttttcataa 283  Q
    | ||| |||||||||| | |||| |||||||||| | ||||||    
T  4617924 ccaaacatccatttgttagataactctcatctgcatatcataa 4617966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 214
Target Start/End: Complemental strand, 4266635 - 4266426
Alignment:
Q  6 agaagcaaa-ggtccaatggtatatacagaaaggaatgtagaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagcc 104  Q
    ||||||||| || |||||||| |||| |||| ||||  |||| ||||| |||||||| ||||||| |||||||||||   |||| |||| ||||||||      
T  4266635 agaagcaaatgggccaatggtgtatatagaagggaacatagagtagagagcattcataacatcactctcaagttcatatgaagtattgataacaatagaa 4266536  T
Q  105 gatgctctgtgaaatctatctgccgcttcaatgagaaattctaccatgacatcattagtatttgttgtccttataaagttaagaaggtccttcagccgaa 204  Q
    || |||| |||| ||||||| ||| ||||  | | ||||| || ||| | |||||||| || |||  ||||| |||| | | |||||||||||| || ||    
T  4266535 gaggctcggtgacatctatccgccacttcggtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaa 4266436  T
Q  205 agttctgcaa 214  Q
    |||| |||||    
T  4266435 agttttgcaa 4266426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 4481369 - 4481477
Alignment:
Q  18 ccaatggtatatacagaaaggaatgtagaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctctgtgaa 117  Q
    |||||||| |||| |||| ||||| |||||||||| | |||||| ||||||| |||||||||||   |||| |||| ||||| ||| |||||||| |||     
T  4481369 ccaatggtgtatagagaagggaatatagaatagagagaattcataacatcactctcaagttcataagaagtattgataacaaaagcagatgctctttgac 4481468  T
Q  118 atctatctg 126  Q
    || ||||||    
T  4481469 atttatctg 4481477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 274
Target Start/End: Complemental strand, 4613005 - 4612918
Alignment:
Q  187 gaaggtccttcagccgaaagttctgcaatccgggaatacaatctagtttggtgtctaaatatccatttgtcaaataagtctcatctgc 274  Q
    |||| |||||||| |||||||||||||||||  ||||||| || | ||| || || |||||||| ||||||| |||| ||||||||||    
T  4613005 gaagatccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgc 4612918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 3172455 - 3172561
Alignment:
Q  56 attcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctctgtgaaatctatctgccgcttcaatgagaaattctaccatgaca 155  Q
    |||||| ||||||| |||||||||||   ||||||||||||||||||| || ||| ||||| || ||||| |  ||||||| | |||||||| ||| | |    
T  3172455 attcataacatcactctcaagttcattagaagtgttgaaaacaatagcagaagctttgtgacatttatctcctacttcaatcataaattctatcatcaaa 3172554  T
Q  156 tcattag 162  Q
    |||||||    
T  3172555 tcattag 3172561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 214
Target Start/End: Original strand, 4458258 - 4458467
Alignment:
Q  6 agaagcaaa-ggtccaatggtatatacagaaaggaatgtagaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagcc 104  Q
    ||||||||| || |||||||| |||| |||| ||||  |||| ||||| | |||||| ||||||| |||||||||||   |||| |||| ||||||||      
T  4458258 agaagcaaatgggccaatggtgtatatagaagggaacatagagtagagagtattcataacatcactctcaagttcataagaagtattgataacaatagaa 4458357  T
Q  105 gatgctctgtgaaatctatctgccgcttcaatgagaaattctaccatgacatcattagtatttgttgtccttataaagttaagaaggtccttcagccgaa 204  Q
    || ||||| ||| ||||||||||| ||||  | | ||||| || ||| | || ||||| || |||  || ||||||| | | |||||||||||| || ||    
T  4458358 gaggctctatgacatctatctgccacttcggttataaattttatcatcaaattattaggatctgtaatctttataaaatcaggaaggtccttcaacctaa 4458457  T
Q  205 agttctgcaa 214  Q
    |||| |||||    
T  4458458 agttttgcaa 4458467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 4593083 - 4593166
Alignment:
Q  191 gtccttcagccgaaagttctgcaatccgggaatacaatctagtttggtgtctaaatatccatttgtcaaataagtctcatctgc 274  Q
    |||||||| ||||||||| | ||| || ||||| ||||||| ||| || || |||||||||||||| | |||| ||||||||||    
T  4593083 gtccttcaaccgaaagtttttcaaacctggaatccaatctactttagtttccaaatatccatttgttagataactctcatctgc 4593166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 4462018 - 4462079
Alignment:
Q  237 gtgtctaaatatccatttgtcaaataagtctcatctgcttttcataattacacaagtcaata 298  Q
    |||||||||||||||| ||| | |||| |||||||||| | ||||||||| | |||||||||    
T  4462018 gtgtctaaatatccatctgttagataaatctcatctgcatatcataattaaaaaagtcaata 4462079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 12 - 332
Target Start/End: Complemental strand, 4151 - 3831
Alignment:
Q  12 aaaggtccaatggtatatacagaaaggaatgtagaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctc 111  Q
    ||||||||||||||||||| |||| ||||  |||||||||| ||||||| |||| | | |||||||||||||||||||||||||||||||| ||| |||     
T  4151 aaaggtccaatggtatataaagaagggaacatagaatagagagcattcaatacaccgctctcaagttcatcgtaagtgttgaaaacaatagtcgaggctt 4052  T
Q  112 tgtgaaatctatctgccgcttcaatgagaaattctaccatgacatcattagtatttgttgtccttataaagttaagaaggtccttcagccgaaagttctg 211  Q
    |||| ||||||||| ||| |||||||| ||| | |||| ||| |||||| | ||||||||||||||  | ||  ||||||||||||||||||||||||||    
T  4051 tgtggaatctatcttccgtttcaatgataaaatttaccctgaaatcatttggatttgttgtccttaatacgtcgagaaggtccttcagccgaaagttctg 3952  T
Q  212 caatccgggaatacaatctagtttggtgtctaaatatccatttgtcaaataagtctcatctgcttttcataattacacaagtcaatatctcgaaacttga 311  Q
    |||||| |||||||  |||| | |  |||||||||||||||||||||||||| |||| ||| ||||||||||||  | |||| |||| || ||| ||| |    
T  3951 caatcctggaataccgtctactctattgtctaaatatccatttgtcaaataactctcgtctccttttcataattgtagaagttaatagcttgaagcttca 3852  T
Q  312 tttaagtatagagagatagat 332  Q
    | || ||||| ||||||||||    
T  3851 tatatgtataaagagatagat 3831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 50 - 288
Target Start/End: Complemental strand, 3142 - 2904
Alignment:
Q  50 gagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctctgtgaaatctatctgccgcttcaatgagaaattctacc 149  Q
    ||||||||||| |||||||| |||||||||||  |||||||| |||||||| || || ||||||||||||  |||||| |||||||||| ||||||||||    
T  3142 gagcgcattcagtacatcactctcaagttcattataagtgttaaaaacaattgcagaagctctgtgaaattgatctgctgcttcaatgaaaaattctacc 3043  T
Q  150 atgacatcattagtatttgttgtccttataaagttaagaaggtccttcagccgaaagttctgcaatccgggaatacaatctagtttggtgtctaaatatc 249  Q
    || | ||||||   || | |||| |||||||||| | |||||||||| || |||||||| | ||  || ||||||||||||| |||| |||| |||||||    
T  3042 ataaaatcattcagatcttttgttcttataaagtcaggaaggtcctttagtcgaaagtttttcatacccggaatacaatctactttgttgtccaaatatc 2943  T
Q  250 catttgtcaaataagtctcatctgcttttcataattaca 288  Q
    || ||||||||||| | |||||||||| |||||||||||    
T  2942 cacttgtcaaataactatcatctgcttgtcataattaca 2904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 20863305 - 20863044
Alignment:
Q  12 aaaggtccaatggtatatacagaaaggaatgtagaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctc 111  Q
    ||||| |||||||| |||| |||| ||||  ||||||||||  ||||||| ||||||| |||||| |||| | |||| |||||||||||||| || ||||    
T  20863305 aaagggccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctc 20863206  T
Q  112 tgtgaaatctatctgccgcttcaatgagaaattctaccatgacatcattagtatttgttgtccttataaagttaagaaggtccttcag-ccgaaagttct 210  Q
    |||||||||||||| |  |||||||||||||||||| ||    |||||||| |||||||||||||||  |  |||||| ||||||||| | |||| |||     
T  20863205 tgtgaaatctatctactacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaatttc- 20863107  T
Q  211 gcaatccgggaatacaatctagtttggtgtctaaatatccatttgtcaaataagtctcatctg 273  Q
    |||| || ||||| | ||| | ||| || || |||||||||||||| | |||| |||||||||    
T  20863106 gcaaacctggaatccgatcaactttagtctccaaatatccatttgttagataactctcatctg 20863044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 274
Target Start/End: Complemental strand, 16685588 - 16685486
Alignment:
Q  172 tccttataaagttaagaaggtccttcagccgaaagttctgcaatccgggaatacaatctagtttggtgtctaaatatccatttgtcaaataagtctcatc 271  Q
    |||||||||||| | | || |||||||| ||||  ||||||||||| |||||||| || | ||| ||||| |||||||| ||||||| |||| |||||||    
T  16685588 tccttataaagtcaggcagatccttcagtcgaatattctgcaatcctggaatacagtccactttagtgtccaaatatccgtttgtcagataactctcatc 16685489  T
Q  272 tgc 274  Q
    |||    
T  16685488 tgc 16685486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 24107045 - 24107188
Alignment:
Q  12 aaaggtccaatggtatatacagaaaggaatgtagaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatg--- 108  Q
    ||||||||||| ||||||| | || ||||  |||||||||||| |||||||||||||| |||||||||||| |||| ||| ||||||||||| ||||       
T  24107045 aaaggtccaatagtatataaaaaagggaacatagaatagagcgtattcattacatcactctcaagttcatcataagcgttaaaaacaatagctgatgatg 24107144  T
Q  109 ctctgtgaaatctatctgccgcttcaatgagaaattctaccatg 152  Q
    ||||   ||||| ||||||||||||||||| ||||| |||||||    
T  24107145 ctctacaaaatccatctgccgcttcaatgaaaaattttaccatg 24107188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 24103662 - 24103880
Alignment:
Q  6 agaagcaaa-ggtccaatggtatatacagaaaggaatgtagaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagcc 104  Q
    ||||||||| || |||||||| |||| |||| ||||  |||| ||||| |||||||| ||||||| |||||||||||   |||| |||| ||||||||      
T  24103662 agaagcaaatgggccaatggtgtatatagaagggaacatagagtagagagcattcataacatcactctcaagttcatatgaagtattgataacaatagaa 24103761  T
Q  105 gatgctctgtgaaatctatctgccgcttcaatgagaaattctaccatgacatcattagtatttgttgtccttataaagttaagaaggtccttcagccgaa 204  Q
    || ||||||||| ||||  | ||| ||||  | | ||||| || ||| | |||||||| || |||  ||||| |||| | | |||||||||||| || ||    
T  24103762 gaggctctgtgacatcttaccgccacttcggtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaa 24103861  T
Q  205 agttctgcaatccgggaat 223  Q
    |||| ||||| || |||||    
T  24103862 agttatgcaaacctggaat 24103880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 3087093 - 3087225
Alignment:
Q  15 ggtccaatggtatatacagaaaggaatgtagaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctctgt 114  Q
    ||||||||||||||||  ||| ||||   |||||| ||||||||||||||||||| |||||||||||| |||||||| || | |||||| || ||| |||    
T  3087093 ggtccaatggtatataatgaagggaacacagaatatagcgcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgt 3087192  T
Q  115 gaaatctatctgccgcttcaatgagaaattcta 147  Q
    | || |||||  || ||||||||| ||||||||    
T  3087193 gtaagctatcccccacttcaatgacaaattcta 3087225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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