View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16008_low_8 (Length: 326)

Name: NF16008_low_8
Description: NF16008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16008_low_8
NF16008_low_8
[»] chr1 (9 HSPs)
chr1 (14-307)||(28326706-28326999)
chr1 (21-126)||(21158520-21158625)
chr1 (197-302)||(21158734-21158839)
chr1 (75-156)||(28239753-28239833)
chr1 (90-130)||(24621179-24621219)
chr1 (69-104)||(29141277-29141312)
chr1 (202-250)||(2288583-2288631)
chr1 (213-269)||(47569543-47569599)
chr1 (90-142)||(47569740-47569791)
[»] chr6 (1 HSPs)
chr6 (77-125)||(384136-384184)
[»] chr2 (1 HSPs)
chr2 (93-129)||(9066866-9066902)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 28326999 - 28326706
Alignment:
Q  14 atgaacgaattagaatacgctaaacattattattgtccgctcacttggccactagcctatagaatagaagtgcaactaaaagcaaaagcatagtccttta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28326999 atgaacgaattagaatacgctaaacattattattgtccgctcacttggccactagcctatagaatagaagtgcaactaaaagcaaaagcatagtccttta 28326900  T
Q  114 attagcaaactaaaaaagcatgtaatctaaatttcgcaaacaaattcaccctccttatttccatatatcttacagagagcctaatcatcatctggaatgc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28326899 attagcaaactaaaaaagcatgtaatctaaatttcgcaaacaaattcaccctccttatttccatatatcttacagagagcctaatcatcatctggaatgc 28326800  T
Q  214 aaccactgtctttcggtaacgtcaatgcttcaccaaataagttcattttaaatagtacggtgttcattgtaatcacatataatcgtagtagcca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28326799 aaccactgtctttcggtaacgtcaatgcttcaccaaataagttcattttaaatagtacggtgttcattgtaatcacatataatcgtagtagcca 28326706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 21158520 - 21158625
Alignment:
Q  21 aattagaatacgctaaacattattattgtccgctcacttggccactagcctatagaatagaagtgcaactaaaagcaaaagcatagtcctttaattagca 120  Q
    ||||||||||  ||||||||||||||||||| || ||||||  | |||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21158520 aattagaatatactaaacattattattgtccacttacttggaaagtagcttatagaatagaagtgcaactaatagcaaaagcatagtcctttaattagca 21158619  T
Q  121 aactaa 126  Q
     |||||    
T  21158620 tactaa 21158625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 302
Target Start/End: Original strand, 21158734 - 21158839
Alignment:
Q  197 atcatcatctggaatgcaaccactgtctttcggtaacgtcaatgcttcaccaaataagttcattttaaatagtacggtgttcattgtaatcacatataat 296  Q
    ||||||||| ||||||||||||||||||||| |||| ||||| ||||||| |||||||  || || ||||||| || | ||| || |||||||| |||||    
T  21158734 atcatcatcaggaatgcaaccactgtctttcagtaatgtcaaagcttcactaaataagcccacttgaaatagtccgttcttcgttataatcacaaataat 21158833  T
Q  297 cgtagt 302  Q
     |||||    
T  21158834 ggtagt 21158839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 28239833 - 28239753
Alignment:
Q  75 gaatagaagtgcaactaaaagcaaaagcatagtcctttaattagcaaactaaaaaagcatgtaatctaaatttcgcaaacaa 156  Q
    |||||||||||||| ||||||||||| || ||||||| |||||||||||| | ||||||||||||||| ||| | |||||||    
T  28239833 gaatagaagtgcaattaaaagcaaaaacaaagtccttaaattagcaaact-agaaagcatgtaatctacattgcacaaacaa 28239753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 24621179 - 24621219
Alignment:
Q  90 taaaagcaaaagcatagtcctttaattagcaaactaaaaaa 130  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  24621179 taaaagcaaaagcatggtcctttaattagaaaactaaaaaa 24621219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 104
Target Start/End: Original strand, 29141277 - 29141312
Alignment:
Q  69 cctatagaatagaagtgcaactaaaagcaaaagcat 104  Q
    |||||| |||||||||||||||||||||||||||||    
T  29141277 cctatataatagaagtgcaactaaaagcaaaagcat 29141312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 2288583 - 2288631
Alignment:
Q  202 catctggaatgcaaccactgtctttcggtaacgtcaatgcttcaccaaa 250  Q
    |||| |||||||||||| ||||||| ||||||||| |||||||| ||||    
T  2288583 catcaggaatgcaaccattgtcttttggtaacgtccatgcttcagcaaa 2288631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 47569599 - 47569543
Alignment:
Q  213 caaccactgtctttcggtaacgtcaatgcttcaccaaataagttcattttaaatagt 269  Q
    |||||| ||||||| | ||||||||||||||||||||| |||  || ||||||||||    
T  47569599 caaccattgtctttggataacgtcaatgcttcaccaaacaagcccactttaaatagt 47569543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 47569791 - 47569740
Alignment:
Q  90 taaaagcaaaagcatagtcctttaattagcaaactaaaaaagcatgtaatcta 142  Q
    ||||||||||| |||||||||| |||||| ||||| | |||||||||||||||    
T  47569791 taaaagcaaaaacatagtccttaaattagaaaact-agaaagcatgtaatcta 47569740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 384136 - 384184
Alignment:
Q  77 atagaagtgcaactaaaagcaaaagcatagtcctttaattagcaaacta 125  Q
    ||||||||||||||||||||| ||||||||| | | |||||| ||||||    
T  384136 atagaagtgcaactaaaagcagaagcatagtgcataaattagaaaacta 384184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 9066902 - 9066866
Alignment:
Q  93 aagcaaaagcatagtcctttaattagcaaactaaaaa 129  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  9066902 aagcaaaagcatagtccttcaattagcaaaccaaaaa 9066866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University