View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16009_high_4 (Length: 220)
Name: NF16009_high_4
Description: NF16009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16009_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 6307659 - 6307820
Alignment:
| Q |
13 |
gaagaatattgtgggaaaattattcaatcaataatatttgttgcttttctctattttgtgtttgactttgtctaattccactcaaccaattttatagtgg |
112 |
Q |
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| T |
6307659 |
gaagaaaattgttggaaaactatttaatcaataatatttgttgcttttctctattttgtgtttgactttgtctaattccactaaaccaattttatagtgg |
6307758 |
T |
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| Q |
113 |
atagcttgcttgaaatttgaataggatgcttcggggattaagatcagttcctattacttctccatatac |
181 |
Q |
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| T |
6307759 |
atagcttgc-------ttgaataggatgcttcggggattaagatcagttcctattacttctccatatac |
6307820 |
T |
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