View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16009_high_5 (Length: 202)
Name: NF16009_high_5
Description: NF16009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16009_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 64; Significance: 3e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 15729586 - 15729523
Alignment:
| Q |
15 |
gaagaaagggtcaaagtgataaaatgatgactgaatatttacaaaccctttttcacgtttctgc |
78 |
Q |
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| T |
15729586 |
gaagaaagggtcaaagtgataaaatgatgactgaatatttacaaaccctttttcacgtttctgc |
15729523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 184
Target Start/End: Complemental strand, 15729444 - 15729416
Alignment:
| Q |
156 |
ggaaacggtggcgagatgctaaggctgac |
184 |
Q |
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| T |
15729444 |
ggaaacggtggcgagatgctaaggctgac |
15729416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 11345340 - 11345277
Alignment:
| Q |
15 |
gaagaaagggtcaaagtgataaaatgatgactgaatatttacaaaccctttttcacgtttctgc |
78 |
Q |
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| T |
11345340 |
gaagaaagggtcaaagtgataaaatgatgacttaatatttacaagccctttttcacgtttctgc |
11345277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 184
Target Start/End: Complemental strand, 11345198 - 11345170
Alignment:
| Q |
156 |
ggaaacggtggcgagatgctaaggctgac |
184 |
Q |
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| T |
11345198 |
ggaaacggtggcgagatgctaaggctgac |
11345170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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