View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16009_low_2 (Length: 275)
Name: NF16009_low_2
Description: NF16009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16009_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 257
Target Start/End: Original strand, 22688081 - 22688329
Alignment:
| Q |
10 |
aaaattccagtatagcaacaaatgacagcaaacagtaacagtaatgcaaggctcaaaaaccctccttcttttactgcatatggcatggtcataagtccta |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22688081 |
aaaattccagtatagcaacaaatgacagcaaacagtaacagtaatgcaaggctcaaaaaccctccttcttttactgcatatggcatagtcataagtccta |
22688180 |
T |
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| Q |
110 |
tcccacataaaagattggttccttcattcaaaacaaatttgatataagttct--tagaaaataaagacattctaagatataaacagatgaaaaattaatt |
207 |
Q |
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||||||||| |||||||||||||||||||||||||| |||||||||||||| | |||||||||||| |||||||||||| |||||| |||||||||| |
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| T |
22688181 |
tcccacatagtagattggttccttcattcaaaacaaaattgatataagttctcaaaaaaaataaagacactctaagatataagcagatg-aaaattaatt |
22688279 |
T |
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| Q |
208 |
atagaacaaattagtcataccattaattactgatcgtgcaaaggaacatt |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22688280 |
atagaacaaattagtcataccattaattactgatcgtgcaaaggaacatt |
22688329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 22698787 - 22698953
Alignment:
| Q |
10 |
aaaattccagtatagcaacaaatgacagcaaacagtaacagtaatgcaaggctcaaaaaccctccttcttttactgcatatggcatggtcataagtccta |
109 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22698787 |
aaaattccagtatagcaacaaatgacagcaaacagtagcagtaatgtaaggctcaacaaccctccttcttttactgcatatggcatggtcataagtccta |
22698886 |
T |
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| Q |
110 |
tcccacataaaagattggttccttcattcaaaacaaatttgatataagttcttagaaaataaagaca |
176 |
Q |
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| T |
22698887 |
tcccacataatagattggttccttcattcaaaacaaatctgatataagttcttagaaaataaagaca |
22698953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 22699164 - 22699229
Alignment:
| Q |
192 |
agatgaaaaattaattatagaacaaattagtcataccattaattactgatcgtgcaaaggaacatt |
257 |
Q |
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|||||| |||||||| ||||| ||||||||| |||||||||||||||||| |||| ||||| |||| |
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| T |
22699164 |
agatgagaaattaatcatagagcaaattagttataccattaattactgattgtgccaaggagcatt |
22699229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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