View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16009_low_3 (Length: 245)
Name: NF16009_low_3
Description: NF16009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16009_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 9163536 - 9163403
Alignment:
| Q |
96 |
acaaataacttaatttttagactgttttcctagtgccgttgttgaaatttttcattattttattggatcaggcaccaaaatcatctggaaaagatgtaaa |
195 |
Q |
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| T |
9163536 |
acaaataacttaatttttagactgttttcctagtgccgttgttgaaatttttcattattttattggatcaggcaccaaaatcatctggaaaagatgtaaa |
9163437 |
T |
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| Q |
196 |
tggatctacgtccaaaagtaatggacctccaaga |
229 |
Q |
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| T |
9163436 |
tggatctacgtccaaaagtaatggacctccaaga |
9163403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 9150898 - 9150767
Alignment:
| Q |
98 |
aaataacttaatttttagactgttttcctagtgccgttgttgaaatttttcattattttattggatcaggcaccaaaatcatctggaaaagatgtaaatg |
197 |
Q |
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| T |
9150898 |
aaataacttaatttttagagcgttttcctattgctgttgttaaaattcttcattattttattgaatcaggaaccaaaatcttctgcaaaagatgtcaatg |
9150799 |
T |
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| Q |
198 |
gatctacgtccaaaagtaatggacctccaaga |
229 |
Q |
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| T |
9150798 |
gatcttcgtccaaaagtaatgcacctccaaga |
9150767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 81
Target Start/End: Complemental strand, 9163587 - 9163557
Alignment:
| Q |
51 |
ttatcattcaacatattttaaacaaaacttg |
81 |
Q |
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| T |
9163587 |
ttatcattcaacatattttaaacaaaacttg |
9163557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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