View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1600_high_10 (Length: 243)
Name: NF1600_high_10
Description: NF1600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1600_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 26805828 - 26806058
Alignment:
| Q |
1 |
cattttattttatagaaatatta---atgctctaatgaagagttagagagaaatgtcgatgtaaattatgctttgtttactttacgaaagnnnnnnn-ta |
96 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
26805828 |
cattttattttatagaaatattattaatgctctaatgaagagttagagagaaatgtcgatgtaaattatgctttgtttactttatgaaagaaaaaaaata |
26805927 |
T |
|
| Q |
97 |
tttgtttattttacttactagaaagtaaatggattttgcttttttaaaaataatgagaatgacaaaagaattgtttttattatttttacaaacaagtcat |
196 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26805928 |
tttgtttattttacttactagaaagtaaaaggattttgcttttttaaaaataatgagaatgacaaaagaattgtttttattatttttacaaacgagtcat |
26806027 |
T |
|
| Q |
197 |
ttgtagcaagcttctcatgttcacaatgttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
26806028 |
ttgtagcaagcttctcatgttcacaatgttt |
26806058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University