View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1600_high_12 (Length: 230)
Name: NF1600_high_12
Description: NF1600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1600_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 36515217 - 36515020
Alignment:
| Q |
20 |
ccttgagcatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattatgttcatatcatatcacacaaatatgcttattgg |
119 |
Q |
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| T |
36515217 |
ccttgagcatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattatgttcatatcatatcacacaaatatgcttattgg |
36515118 |
T |
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| Q |
120 |
aatagaagttatggagctgaccatttcatgctttcttgtcatgattgggtacttccttgaccatttttgtgtccagtgtttgtgtccgtatctgtgct |
217 |
Q |
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| T |
36515117 |
aatagaagttatggagctgaccatttcatgctttcttgtcatgattgggtacttccttgaccatttttgtgtccagtgtctgtgtccgtatctgtgct |
36515020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 36806009 - 36806206
Alignment:
| Q |
20 |
ccttgagcatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattatgttcatatcatatcacacaaatatgcttattgg |
119 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36806009 |
ccttgaacatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattatgttcatatcatatcacacaaatatgcatattgg |
36806108 |
T |
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| Q |
120 |
aatagaagttatggagctgaccatttcatgctttcttgtcatgattgggtacttccttgaccatttttgtgtccagtgtttgtgtccgtatctgtgct |
217 |
Q |
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| T |
36806109 |
aatagaagttatggagctgatcatttcatgctttcttgtcatgattgggtactttcttgaccatttctgtgtctggtgtctgtgtccgtatctgtgct |
36806206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 41756718 - 41756757
Alignment:
| Q |
131 |
tggagctgaccatttcatgctttcttgtcatgattgggta |
170 |
Q |
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| T |
41756718 |
tggagctgatcatttcatgctttcttgccatgattgggta |
41756757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 41764634 - 41764699
Alignment:
| Q |
105 |
aaatatgcttattggaatagaagttatggagctgaccatttcatgctttcttgtcatgattgggta |
170 |
Q |
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| T |
41764634 |
aaatatccctattggaaccgaagtcatggagctgatcatttcatacttgcttgccatgattgggta |
41764699 |
T |
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