View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1600_high_13 (Length: 228)
Name: NF1600_high_13
Description: NF1600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1600_high_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 12266452 - 12266679
Alignment:
| Q |
1 |
aacctcttgcagaatttcataattaaatttccaaagcaataaatatatgtctagtatctataccaaatttaattctaaatttccaatagtagaggtttta |
100 |
Q |
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| T |
12266452 |
aacctcttacagaatttcataattaaatttccaaagcaataaatatatgtctagtatctataccaaatttaattataaatttccaatagtagaggtttta |
12266551 |
T |
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| Q |
101 |
tttttgatctatagtgtgtggtccctatttgaaattgacacccttggatctcaccggtttcagtgtcaaaaatcaataaatacaagtcactctattcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12266552 |
tttttgatctatagtgtgtggtccctatttgaaattgacacccttggatctcaccggtttcagtgtcaaaaatcaataaatacaagtcactctattcttt |
12266651 |
T |
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| Q |
201 |
ccttggccccattactatttccaccacc |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
12266652 |
ccttggccccattactatttccaccacc |
12266679 |
T |
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