View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1600_high_2 (Length: 484)
Name: NF1600_high_2
Description: NF1600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1600_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 11 - 467
Target Start/End: Original strand, 29351385 - 29351840
Alignment:
| Q |
11 |
cacagaatgaacattttcatttcatagatcactattggcttatctgtcactcggtcacacctcttttagtttattgtacatatacagaccctgtcatact |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29351385 |
cacagaatgaacattttcatttcatagatcactattggcttatctgtcactcggtcacacctcttttagtttattgtacatatacagatcctgtcatact |
29351484 |
T |
|
| Q |
111 |
tcacaaggacaacactttgaggttctgaattcagaatatttgtttgctgatatgcttagacacaaaatgggttttcatttgagaagctatatctatttta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29351485 |
tcacaaggacaacactttgaggttctgaattcagaatatttgtttgctgatatgcttagacacaaaatgggttttcatttgagaagctatatctatttta |
29351584 |
T |
|
| Q |
211 |
aggtacaacaaatcaggcctaggcatcaaacaatatatttttcaattggagttatgagtatagttcatttagactaagatcaattaggctcccaaacata |
310 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29351585 |
aggtacaacaaatcaggcttaggcatcaaactatatatttttcaattggagttatgagtatagttcatttagactaagatcaattaggctcccgaacata |
29351684 |
T |
|
| Q |
311 |
attgttgtatacatacattgaaataagaaggnnnnnnnnnngtggacgttagtcacatgaaaatcgtttagaatggtccattacatagaaatgaagatca |
410 |
Q |
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| T |
29351685 |
attgttgtatacacacattgaaataagaagg-aaaaaaaatgtggacgttaggcacatgaaaatcgtttagaatggtccattacatagaaatgaagatca |
29351783 |
T |
|
| Q |
411 |
aatgatcaatgttcatggaacttgtgagtatgaaaagagaatattctagcaaaatcg |
467 |
Q |
| |
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| T |
29351784 |
aatgatcaatgttcatggaacttgtgagtatgaaaagagaatattctagcaaaatcg |
29351840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 280 - 468
Target Start/End: Complemental strand, 34327464 - 34327281
Alignment:
| Q |
280 |
tagactaagatcaattaggctcccaaacataattgttgtatacatacattgaaataagaaggnnnnnnnnnngtggacgttagtcacatgaaaatcgttt |
379 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||| |
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| T |
34327464 |
tagactaagatcaattaggctcccaaccataattgttgtatacatacattgaaataagaagaaaaaga-----tggaagttaggcacatgaaaatcgttt |
34327370 |
T |
|
| Q |
380 |
agaatggtccattacatagaaatgaagatcaaatgatcaatgttcatggaacttgtgagtatgaaaagagaatattctagcaaaatcgt |
468 |
Q |
| |
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||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34327369 |
agaatcgtccattacatagaagtgaagaacaaatgatcaatgttcatggaacttgttagtatgaaaagagaatattctagcaaaatcgt |
34327281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 21 - 468
Target Start/End: Complemental strand, 4029828 - 4029388
Alignment:
| Q |
21 |
acattttcatttcatagatcactattggcttatctgtcactcggtcacacctcttttagtttattgtacatatacagaccctgtcatacttcacaaggac |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
4029828 |
acattttcatttcatagatcactattggcttatctgtcactcggtcacacctcttttattttattgtacatatacagaccctgtcatgcttcacaaggac |
4029729 |
T |
|
| Q |
121 |
aacactttgaggttctgaattcagaatatttgtttgctgatatgcttagacacaaaatgggttttcatttgagaagctatatctattttaaggtacaaca |
220 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
4029728 |
aacactttgaggttctgaattcagaatatttctta-ctgatatgcttagacacaaaatgggttttcatt-gagaagctatatctattttaaggtacaaga |
4029631 |
T |
|
| Q |
221 |
aatcaggcctaggcatcaaacaatatatttttcaattggagttatgagtatagttcatttagactaagatcaattaggctcccaaacataattgttgtat |
320 |
Q |
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|||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
4029630 |
aatcaggcttaggcatcaatctatatatttttcaattggagttatgagtatagttcatttagactaagatcaattaggctcccaaccataatttttgtat |
4029531 |
T |
|
| Q |
321 |
acatacattgaaataagaaggnnnnnnnnnngtggacgttagtcacatgaaaatcgtttagaatggtccattacatagaaatgaagatcaaatgatcaat |
420 |
Q |
| |
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|||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||| |
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| T |
4029530 |
acatacattgaaataagaag-----aaaaaggtggaagttaggcacatgaaaatcgtttagaatcgtccattacatagaagtgaagaacaaatgatcaat |
4029436 |
T |
|
| Q |
421 |
gttcatggaacttgtgagtatgaaaagagaatattctagcaaaatcgt |
468 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4029435 |
gttcatgggacttgtgagtatgaaaagagaatattctagcaaaatcgt |
4029388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 199 - 467
Target Start/End: Complemental strand, 30251446 - 30251185
Alignment:
| Q |
199 |
atatctattttaaggtacaacaaatcaggcctaggcatcaaacaatatatttttcaattggagttatgagtatagttcatttagactaagatcaattagg |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30251446 |
atatctattttaaggtacaacaaatcaggcttaggcgtcaatctatatatttttcaattggagttatgagtatagttcatttagactaagatcaattagg |
30251347 |
T |
|
| Q |
299 |
ctcccaaacataattgttgtatacatacattgaaataagaaggnnnnnnnnnngtggacgttagtcacatgaaaatcgtttagaatggtccattacatag |
398 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||| |||||| |
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| T |
30251346 |
ctcccaaacataattgttgtatacatacattgaaataagaag------aaaaattggaagttaggcacatgagaatcgtttagaatggtccatcacatag |
30251253 |
T |
|
| Q |
399 |
aaatgaagatcaaatgatcaatgttcatggaacttgtgagtatgaaaagagaatattctagcaaaatcg |
467 |
Q |
| |
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|| ||||| ||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||| |
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| T |
30251252 |
aagcgaagaacaaatgatcaatgttcatggaacttttga-aatggaaagagaatattgtagcaaaatcg |
30251185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 174
Target Start/End: Original strand, 24249032 - 24249075
Alignment:
| Q |
131 |
ggttctgaattcagaatatttgtttgctgatatgcttagacaca |
174 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||| ||||| |
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|
| T |
24249032 |
ggttctgaattcagaatatttggttactgatatgcttaaacaca |
24249075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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