View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1600_high_3 (Length: 449)

Name: NF1600_high_3
Description: NF1600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1600_high_3
NF1600_high_3
[»] chr5 (12 HSPs)
chr5 (334-426)||(26076710-26076802)
chr5 (181-328)||(22731263-22731410)
chr5 (214-328)||(15968340-15968454)
chr5 (184-328)||(29031041-29031185)
chr5 (215-323)||(27488377-27488485)
chr5 (214-328)||(1015160-1015274)
chr5 (215-328)||(26327566-26327679)
chr5 (218-323)||(1138227-1138332)
chr5 (221-290)||(919684-919754)
chr5 (220-290)||(33478142-33478213)
chr5 (220-290)||(18473510-18473581)
chr5 (215-274)||(14723416-14723476)
[»] chr7 (17 HSPs)
chr7 (184-321)||(32811389-32811526)
chr7 (214-328)||(4826791-4826905)
chr7 (214-328)||(27231838-27231952)
chr7 (214-321)||(31227522-31227629)
chr7 (214-328)||(1366599-1366713)
chr7 (218-328)||(28020005-28020115)
chr7 (215-290)||(42457022-42457097)
chr7 (221-291)||(49069080-49069150)
chr7 (218-290)||(8566123-8566196)
chr7 (220-290)||(36245418-36245489)
chr7 (220-290)||(28677359-28677430)
chr7 (220-274)||(30869244-30869299)
chr7 (181-275)||(2523827-2523922)
chr7 (218-291)||(2610220-2610294)
chr7 (221-290)||(6838411-6838481)
chr7 (220-290)||(16861547-16861617)
chr7 (215-244)||(32811798-32811827)
[»] chr8 (15 HSPs)
chr8 (214-328)||(36366029-36366143)
chr8 (214-328)||(12958805-12958919)
chr8 (214-328)||(22429564-22429678)
chr8 (214-328)||(44796371-44796485)
chr8 (214-318)||(35011241-35011345)
chr8 (215-328)||(6899450-6899563)
chr8 (181-328)||(24177968-24178115)
chr8 (214-328)||(42786393-42786506)
chr8 (239-328)||(32575229-32575318)
chr8 (215-290)||(24915212-24915287)
chr8 (220-290)||(13831403-13831473)
chr8 (220-290)||(42123008-42123079)
chr8 (218-291)||(13964456-13964530)
chr8 (215-290)||(5031494-5031570)
chr8 (215-247)||(16448875-16448907)
[»] chr4 (16 HSPs)
chr4 (214-328)||(47866065-47866179)
chr4 (214-323)||(20459250-20459359)
chr4 (214-328)||(20745336-20745450)
chr4 (214-328)||(43020785-43020899)
chr4 (214-328)||(3043821-3043935)
chr4 (214-328)||(20956919-20957033)
chr4 (214-324)||(27841860-27841970)
chr4 (214-328)||(42804285-42804399)
chr4 (218-328)||(55190671-55190781)
chr4 (218-290)||(30191929-30192002)
chr4 (220-290)||(48361087-48361158)
chr4 (222-275)||(35429830-35429884)
chr4 (220-289)||(48195925-48195995)
chr4 (220-276)||(44111801-44111858)
chr4 (258-290)||(34226429-34226461)
chr4 (215-247)||(41116592-41116624)
[»] chr2 (26 HSPs)
chr2 (215-328)||(45571060-45571173)
chr2 (215-328)||(45574727-45574840)
chr2 (215-328)||(45578394-45578507)
chr2 (215-328)||(45582061-45582174)
chr2 (215-328)||(45585728-45585841)
chr2 (215-328)||(45589395-45589508)
chr2 (215-328)||(45593062-45593175)
chr2 (215-328)||(45596729-45596842)
chr2 (215-328)||(45600396-45600509)
chr2 (215-328)||(45604063-45604176)
chr2 (215-328)||(45607730-45607843)
chr2 (215-328)||(45611397-45611510)
chr2 (215-328)||(45615064-45615177)
chr2 (214-328)||(45034427-45034541)
chr2 (220-321)||(4044586-4044687)
chr2 (214-328)||(4063301-4063415)
chr2 (215-323)||(15384457-15384565)
chr2 (214-322)||(3838428-3838536)
chr2 (220-288)||(9152423-9152492)
chr2 (218-290)||(38983041-38983114)
chr2 (220-328)||(12486027-12486136)
chr2 (215-274)||(20555288-20555348)
chr2 (220-290)||(32457255-32457326)
chr2 (215-276)||(11030248-11030310)
chr2 (220-290)||(43714016-43714086)
chr2 (220-248)||(5559398-5559426)
[»] chr1 (15 HSPs)
chr1 (214-328)||(34662711-34662825)
chr1 (214-328)||(43929350-43929464)
chr1 (215-328)||(47678260-47678373)
chr1 (215-321)||(47844564-47844670)
chr1 (218-290)||(44939108-44939181)
chr1 (220-328)||(34332511-34332620)
chr1 (215-290)||(49944863-49944939)
chr1 (215-275)||(38737988-38738049)
chr1 (215-274)||(38590124-38590184)
chr1 (220-291)||(50155339-50155411)
chr1 (220-290)||(15342972-15343043)
chr1 (220-274)||(26070859-26070914)
chr1 (215-276)||(519889-519951)
chr1 (218-290)||(26760215-26760288)
chr1 (219-290)||(11386189-11386261)
[»] scaffold0242 (1 HSPs)
scaffold0242 (214-290)||(16536-16612)
[»] chr6 (8 HSPs)
chr6 (214-328)||(2810108-2810222)
chr6 (214-286)||(1837006-1837078)
chr6 (220-290)||(8646721-8646791)
chr6 (257-328)||(2943315-2943386)
chr6 (220-290)||(2230391-2230462)
chr6 (220-291)||(27909009-27909082)
chr6 (218-290)||(30627856-30627929)
chr6 (220-291)||(7649834-7649906)
[»] chr3 (14 HSPs)
chr3 (214-322)||(29457850-29457958)
chr3 (214-323)||(33371890-33371999)
chr3 (215-319)||(49885409-49885513)
chr3 (215-281)||(5177817-5177883)
chr3 (221-323)||(54087407-54087509)
chr3 (220-289)||(32711245-32711315)
chr3 (218-290)||(19649621-19649694)
chr3 (220-290)||(48593177-48593248)
chr3 (220-273)||(54537478-54537532)
chr3 (220-276)||(23223014-23223071)
chr3 (220-276)||(44518071-44518128)
chr3 (215-247)||(8266263-8266295)
chr3 (218-289)||(43448991-43449063)
chr3 (215-247)||(52864981-52865013)
[»] scaffold0024 (1 HSPs)
scaffold0024 (258-321)||(7198-7261)
[»] scaffold0236 (1 HSPs)
scaffold0236 (222-274)||(16709-16762)
[»] scaffold0110 (1 HSPs)
scaffold0110 (215-247)||(1618-1650)


Alignment Details
Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 334 - 426
Target Start/End: Original strand, 26076710 - 26076802
Alignment:
Q  334 aatcttatctatattttatgaataaattgttccattaaatttcgtagcatctcttggctcccccaatgcatatcatagcaccttttggctccc 426  Q
    |||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26076710 aatcttatatatattttatgaataaatagttccattaaatttcatagcatctcttggctcccccaatgcatatcatagcaccttttggctccc 26076802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 181 - 328
Target Start/End: Complemental strand, 22731410 - 22731263
Alignment:
Q  181 atatactccttccggtcctatttatnnnnnnnngttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaacta 280  Q
    ||||||| | |||||||||||||||        |||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||    
T  22731410 atatactacctccggtcctatttataagaaaaagttaattttttagattcattaaataattaatgtacctagcctagaaatagaccaaatacatcaacta 22731311  T
Q  281 ttcaatgaattnnnnnnntaaattgtttcttatatataggaccagagg 328  Q
    ||||||||||        ||||||||||||||||||||||||| ||||    
T  22731310 ttcaatgaatcaaaaaagtaaattgtttcttatatataggaccggagg 22731263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 15968340 - 15968454
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    |||||||||||||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  15968340 gttaattttttagattcattcaataattaatgtatctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttat 15968439  T
Q  314 atataggaccagagg 328  Q
    |||||||||| ||||    
T  15968440 atataggacctgagg 15968454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 184 - 328
Target Start/End: Complemental strand, 29031185 - 29031041
Alignment:
Q  184 tactccttccggtcctatttatnnnnnnnngttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattc 283  Q
    |||||| |||||||||||||||        ||||| |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  29031185 tactccctccggtcctatttataagaaaaagttaactttttagattcattcaacaattgatgtacctagcctagaaatagaccaaatacatcaactattc 29031086  T
Q  284 aatgaattnnnnnnntaaattgtttcttatatataggaccagagg 328  Q
    |||||||        |||||||||||||||||||| |||| ||||    
T  29031085 aatgaatcaaaaaagtaaattgtttcttatatataagaccggagg 29031041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 215 - 323
Target Start/End: Original strand, 27488377 - 27488485
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| |||||||||| |||||||        ||||||||||||||||    
T  27488377 ttaattttttagattcattcaataattgatgtatctagcctagaaatagaccaaatatatcaactattgaatgaatcaaaaaagtaaattgtttcttata 27488476  T
Q  315 tataggacc 323  Q
    |||||||||    
T  27488477 tataggacc 27488485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 214 - 328
Target Start/End: Complemental strand, 1015274 - 1015160
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    ||||| |||||||||||||| | |||| |||||||||| | ||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  1015274 gttaactttttagattcattcaataatcgatgtacctaacttagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttat 1015175  T
Q  314 atataggaccagagg 328  Q
    |||||||||| ||||    
T  1015174 atataggaccggagg 1015160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 215 - 328
Target Start/End: Original strand, 26327566 - 26327679
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    |||| |||||||||||||| | |||||||||||||||  ||| ||||||||||||||||||||||||||||| |||        |||||| |||||||||    
T  26327566 ttaactttttagattcattcaataattgatgtacctaatctaaaaatagaccaaatacatcaactattcaataaatcaaaaaagtaaattctttcttata 26327665  T
Q  315 tataggaccagagg 328  Q
    ||||| ||| ||||    
T  26327666 tatagaaccggagg 26327679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 323
Target Start/End: Complemental strand, 1138332 - 1138227
Alignment:
Q  218 attttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttatatat 317  Q
    |||||||| ||||||| | ||||| ||||| |||| ||||||||||||||||||||| || |||||||| |||        |||||||||||||||| ||    
T  1138332 attttttaaattcattaaataattaatgtatctagactagaaatagaccaaatacattaattattcaataaatcaaaaaagtaaattgtttcttataaat 1138233  T
Q  318 aggacc 323  Q
    ||||||    
T  1138232 aggacc 1138227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 919754 - 919684
Alignment:
Q  221 ttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    ||||||||||||||||||||||||||| ||||  ||||| |||||||||||||||||  |||| |||||||    
T  919754 ttttagattcattgagtaattgatgtatctagtatagaatatagaccaaatacatcatttattgaatgaat 919684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 33478142 - 33478213
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    |||||||||||||||||||||||||||| || | |||||| |||| ||||||||||||  ||| ||||||||    
T  33478142 tttttagattcattgagtaattgatgtatctcgtctagaatataggccaaatacatcatttatgcaatgaat 33478213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 18473510 - 18473581
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    |||||||||||||||||||||||||||| || | |||||| ||||| ||||| |||||  ||| ||||||||    
T  18473510 tttttagattcattgagtaattgatgtatcttgtctagaatatagatcaaatgcatcatttatacaatgaat 18473581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 14723416 - 14723476
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacat 274  Q
    |||| |||||| |||||||||||||||||| || |||  |||||| |||||||||||||||    
T  14723416 ttaactttttaaattcattgagtaattgatatatctaatctagaatatagaccaaatacat 14723476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 184 - 321
Target Start/End: Complemental strand, 32811526 - 32811389
Alignment:
Q  184 tactccttccggtcctatttatnnnnnnnngttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattc 283  Q
    |||||| |||||||||||||||        |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32811526 tactccctccggtcctatttataagaaaaagttaattttttagattcattcagtaattgatgtacctagcctagaaatagaccaaatacatcaattattc 32811427  T
Q  284 aatgaattnnnnnnntaaattgtttcttatatatagga 321  Q
    |||||||        |||||||||||||||||||||||    
T  32811426 aatgaatcaaaaaagtaaattgtttcttatatatagga 32811389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 4826791 - 4826905
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    ||||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  4826791 gttaactttttagattcattcaataattgatgtacttagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttat 4826890  T
Q  314 atataggaccagagg 328  Q
    |||||||||| ||||    
T  4826891 atataggaccggagg 4826905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 214 - 328
Target Start/End: Complemental strand, 27231952 - 27231838
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    ||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  27231952 gttaactttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttat 27231853  T
Q  314 atataggaccagagg 328  Q
     ||||||||| ||||    
T  27231852 gtataggaccggagg 27231838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 214 - 321
Target Start/End: Original strand, 31227522 - 31227629
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    |||||||||||||||||||| | || ||||||||  |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  31227522 gttaattttttagattcattcaatagttgatgtatttagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttat 31227621  T
Q  314 atatagga 321  Q
    ||||||||    
T  31227622 atatagga 31227629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 214 - 328
Target Start/End: Complemental strand, 1366713 - 1366599
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    ||||| |||||||||||||| | ||||||||||||||||   |||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  1366713 gttaactttttagattcattcaataattgatgtacctagttcagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttat 1366614  T
Q  314 atataggaccagagg 328  Q
    |||||||||| ||||    
T  1366613 atataggaccggagg 1366599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 28020115 - 28020005
Alignment:
Q  218 attttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttatatat 317  Q
    |||||||||||||||| | |||||| |||| ||  ||||||||||||||||||||||||||||||||||||||        |||||||||||||||| ||    
T  28020115 attttttagattcattaaataattgttgtatctgacctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttataaat 28020016  T
Q  318 aggaccagagg 328  Q
    |||||||||||    
T  28020015 aggaccagagg 28020005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 42457097 - 42457022
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaat 290  Q
    |||| |||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42457097 ttaactttttagatttattcaataattgatgtacctagcttagaaatagaccaaatacatcaactattcaatgaat 42457022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 49069080 - 49069150
Alignment:
Q  221 ttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatt 291  Q
    ||||||||||||| | |||||||| |||||| | |||||||||||||||||||||||||||||||||||||    
T  49069080 ttttagattcattcaataattgatatacctaccatagaaatagaccaaatacatcaactattcaatgaatt 49069150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 290
Target Start/End: Complemental strand, 8566196 - 8566123
Alignment:
Q  218 attttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    |||||||||||||||||||||||||||||| || | |||||| |||||||||||||||||  ||| ||||||||    
T  8566196 attttttagattcattgagtaattgatgtatcttgtctagaatatagaccaaatacatcatttatgcaatgaat 8566123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 36245489 - 36245418
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    |||||||||||||||||||||||||||| || | |||||| |||||||||||||||||  ||| ||||||||    
T  36245489 tttttagattcattgagtaattgatgtatcttgtctagaatatagaccaaatacatcatttatgcaatgaat 36245418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 28677430 - 28677359
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    |||||||||| ||||||||||||||||| || | |||||| |||||||||||||||||  ||| ||||||||    
T  28677430 tttttagatttattgagtaattgatgtatcttgtctagaatatagaccaaatacatcatttatgcaatgaat 28677359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 30869299 - 30869244
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacat 274  Q
    |||||||||||||||||||||||||||| || | |||||| |||||||||||||||    
T  30869299 tttttagattcattgagtaattgatgtatcttgtctagaatatagaccaaatacat 30869244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 2523922 - 2523827
Alignment:
Q  181 atatactccttccggtcctatttatnnnnnnnngttaattttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatc 275  Q
    ||||||||| |||||||||||||||        ||| | |||||||||||||||||||||| |||||| | || ||||| |||||||| |||||||    
T  2523922 atatactccctccggtcctatttataagaaaaagttgactttttagattcattgagtaattaatgtacttggcatagaatatagaccagatacatc 2523827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 2610220 - 2610294
Alignment:
Q  218 attttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaatt 291  Q
    |||||||| |||||||||||||||||||||  | | |||||| |||||| ||||||||||  ||| |||||||||    
T  2610220 attttttaaattcattgagtaattgatgtatttggtctagaatatagactaaatacatcatttatgcaatgaatt 2610294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 6838411 - 6838481
Alignment:
Q  221 ttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    |||| |||||||||||||||| ||||| || | |||||| |||||||||||||||||  ||| ||||||||    
T  6838411 tttttgattcattgagtaattaatgtatcttgtctagaatatagaccaaatacatcatttatgcaatgaat 6838481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 16861547 - 16861617
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaat 290  Q
    |||||||||||||||| |||||||||||  ||| ||| |||||| ||  |||||| || ||||||||||||    
T  16861547 tttttagattcattgaataattgatgtatatagtctaaaaatagcccggatacattaattattcaatgaat 16861617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 244
Target Start/End: Complemental strand, 32811827 - 32811798
Alignment:
Q  215 ttaattttttagattcattgagtaattgat 244  Q
    ||||||||||||||||||||||||||||||    
T  32811827 ttaattttttagattcattgagtaattgat 32811798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 214 - 328
Target Start/End: Complemental strand, 36366143 - 36366029
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||        |||||||||||||||    
T  36366143 gttaattttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattgaatgaatcaaaaaagtaaattgtttcttat 36366044  T
Q  314 atataggaccagagg 328  Q
    |||||||||| ||||    
T  36366043 atataggaccggagg 36366029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 12958805 - 12958919
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    ||||| |||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  12958805 gttaactttttagattcattcaataattgatgtacctagcttagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttat 12958904  T
Q  314 atataggaccagagg 328  Q
    |||||||||| ||||    
T  12958905 atataggaccggagg 12958919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 22429564 - 22429678
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    |||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  22429564 gttaattttttagatttattcaataattaatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttat 22429663  T
Q  314 atataggaccagagg 328  Q
    |||||||||| ||||    
T  22429664 atataggaccggagg 22429678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 44796371 - 44796485
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    ||||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  44796371 gttaactttttagattcattcaataattgatgtacatagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttat 44796470  T
Q  314 atataggaccagagg 328  Q
    |||||||||| ||||    
T  44796471 atataggaccggagg 44796485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 214 - 318
Target Start/End: Original strand, 35011241 - 35011345
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    |||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  35011241 gttaattttttagattcattcaataattaatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttat 35011340  T
Q  314 atata 318  Q
    |||||    
T  35011341 atata 35011345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 215 - 328
Target Start/End: Original strand, 6899450 - 6899563
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    |||| |||| ||||||||| | ||||||||||||||| |||||||||||| |||||||||||||||||||||||||        ||||||||||||||||    
T  6899450 ttaacttttgagattcattcaataattgatgtacctaacctagaaatagatcaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttata 6899549  T
Q  315 tataggaccagagg 328  Q
    ||||||||| ||||    
T  6899550 tataggaccggagg 6899563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 181 - 328
Target Start/End: Original strand, 24177968 - 24178115
Alignment:
Q  181 atatactccttccggtcctatttatnnnnnnnngttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaacta 280  Q
    ||||||| | |||||||||||||||        ||||| |||||||||||||| | || |||||||||||||| ||||||||||||||||||||||||||    
T  24177968 atatactacctccggtcctatttataagaaaaagttaactttttagattcattcaatatttgatgtacctagcttagaaatagaccaaatacatcaacta 24178067  T
Q  281 ttcaatgaattnnnnnnntaaattgtttcttatatataggaccagagg 328  Q
    ||||||||||        |||| |||||||||||||||| ||| ||||    
T  24178068 ttcaatgaatcaaaaaaataaactgtttcttatatatagaaccggagg 24178115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 42786393 - 42786506
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    ||||| |||||||||||||| | |||||||||||| |||| |||||||||||||||||||| ||||||||||| || |       |||||||||||||||    
T  42786393 gttaactttttagattcattcaataattgatgtacttagcttagaaatagaccaaatacattaactattcaat-aaatcaaaaagtaaattgtttcttat 42786491  T
Q  314 atataggaccagagg 328  Q
    |||||||||| ||||    
T  42786492 atataggaccggagg 42786506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 239 - 328
Target Start/End: Original strand, 32575229 - 32575318
Alignment:
Q  239 attgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttatatataggaccagagg 328  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||        |||||||||| |||||||||||||| ||||    
T  32575229 attgatgtacctagcctaaaaatagaccaaatacatcaattattcaatgaataaaaaaagtaaattgttttttatatataggaccggagg 32575318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 24915287 - 24915212
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaat 290  Q
    |||| |||||||||||||| | ||||||||||| ||||| ||||||||||| ||||||||||| |||| |||||||    
T  24915287 ttaactttttagattcattaaataattgatgtatctagcttagaaatagacaaaatacatcaattatttaatgaat 24915212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 13831473 - 13831403
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaat 290  Q
    |||||||||||||| | |||||||||||  ||| ||| ||||||||| |||||||||| |||| |||||||    
T  13831473 tttttagattcattaaataattgatgtatttagtctaaaaatagaccgaatacatcaattatttaatgaat 13831403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 42123079 - 42123008
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    |||||||||||||||||||||| ||||| || | |||||| ||| |||||||||||||  ||| ||||||||    
T  42123079 tttttagattcattgagtaattaatgtatcttgtctagaatatataccaaatacatcatttatgcaatgaat 42123008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 291
Target Start/End: Complemental strand, 13964530 - 13964456
Alignment:
Q  218 attttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaatt 291  Q
    |||||||||||||||||||||| |||||||| | | ||| || |||||||| ||||||||  |||| ||||||||    
T  13964530 attttttagattcattgagtaaatgatgtacatggtctataatatagaccacatacatcatttattgaatgaatt 13964456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 5031494 - 5031570
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    |||| |||||| ||||||| ||||||||||||| || | |||||| |||||| ||||||||||  ||| ||||||||    
T  5031494 ttaactttttaaattcattaagtaattgatgtatcttgtctagaatatagactaaatacatcatttatgcaatgaat 5031570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 16448907 - 16448875
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgta 247  Q
    |||| ||||||||||||||||||||||||||||    
T  16448907 ttaactttttagattcattgagtaattgatgta 16448875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 9e-34; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 47866065 - 47866179
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    ||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  47866065 gttaactttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttat 47866164  T
Q  314 atataggaccagagg 328  Q
    |||||||||| ||||    
T  47866165 atataggaccggagg 47866179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 214 - 323
Target Start/End: Complemental strand, 20459359 - 20459250
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    ||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  20459359 gttaactttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttat 20459260  T
Q  314 atataggacc 323  Q
    ||||||||||    
T  20459259 atataggacc 20459250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 214 - 328
Target Start/End: Complemental strand, 20745450 - 20745336
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||        |||||||||| ||||    
T  20745450 gttaattttttagattcattcaataattgatgtacctagcctagaaatagatcaaatacatcaactattcaatgaatcaaaaaagtaaattgttttttat 20745351  T
Q  314 atataggaccagagg 328  Q
    |||||||||| ||||    
T  20745350 atataggaccggagg 20745336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 43020785 - 43020899
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    ||||| |||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  43020785 gttaactttttagattcattcaataattgatgtacctaacctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttat 43020884  T
Q  314 atataggaccagagg 328  Q
    |||||||||| ||||    
T  43020885 atataggaccggagg 43020899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 3043821 - 3043935
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    |||||||||||||||||||| | |||||||||||||||| ||| |||||||||||||||||||||||||||||||||        |||||||||||||||    
T  3043821 gttaattttttagattcattcaataattgatgtacctagtctaaaaatagaccaaatacatcaactattcaatgaatcaaaaaaataaattgtttcttat 3043920  T
Q  314 atataggaccagagg 328  Q
    |||||| ||| ||||    
T  3043921 atatagaaccggagg 3043935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 20956919 - 20957033
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    |||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||| |||||||        |||||||||||||||    
T  20956919 gttaattttttagattcattcaataattgatgtagctagcctagaaatagaccaaatacatcaactattgaatgaatcaaaaaaataaattgtttcttat 20957018  T
Q  314 atataggaccagagg 328  Q
    |||||| ||| ||||    
T  20957019 atatagaaccggagg 20957033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 214 - 324
Target Start/End: Original strand, 27841860 - 27841970
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||||| ||||||||||||||||||||||||         |||||||||||||||    
T  27841860 gttaattttttagattcattcaataattaatgtacctagcctagaaatagatcaaatacatcaactattcaatgaacaaaaaaaataaattgtttcttat 27841959  T
Q  314 atataggacca 324  Q
    ||||| |||||    
T  27841960 atataagacca 27841970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 42804285 - 42804399
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    ||||| |||||||||||||| | |||||||||||||||   |||||||||||||||||||||||||||| |||||||        |||||||||||||||    
T  42804285 gttaactttttagattcattcaataattgatgtacctaatttagaaatagaccaaatacatcaactatttaatgaatcaaaaaaataaattgtttcttat 42804384  T
Q  314 atataggaccagagg 328  Q
    |||||||||| ||||    
T  42804385 atataggaccggagg 42804399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 55190781 - 55190671
Alignment:
Q  218 attttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttatatat 317  Q
    |||||||| ||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||| || |||||        |||||||||||||||||||    
T  55190781 attttttatattcattcaataattgatgtatctagcctagaaatagaccaaatacatcaattatccactgaatcaaaaaagtaaattgtttcttatatat 55190682  T
Q  318 aggaccagagg 328  Q
    |||||||||||    
T  55190681 aggaccagagg 55190671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 290
Target Start/End: Original strand, 30191929 - 30192002
Alignment:
Q  218 attttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    ||||||||||||||||||||||||||||||  | | |||||| |||||||||||||||||  ||| ||||||||    
T  30191929 attttttagattcattgagtaattgatgtattttgtctagaatatagaccaaatacatcatttatgcaatgaat 30192002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 48361087 - 48361158
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    ||||||||||||||||||||||||||||  | | |||||| |||||||||||||||||  ||| ||||||||    
T  48361087 tttttagattcattgagtaattgatgtattttgtctagaatatagaccaaatacatcatttatgcaatgaat 48361158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 35429884 - 35429830
Alignment:
Q  222 tttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatc 275  Q
    |||||||| ||||||||||||||||| || | |||||| ||||||||||||||||    
T  35429884 tttagattaattgagtaattgatgtatcttgtctagaatatagaccaaatacatc 35429830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 48195925 - 48195995
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaa 289  Q
    |||||| ||||||||||||||||| ||| || | |||||| |||||||||||||||||  ||| |||||||    
T  48195925 tttttaaattcattgagtaattgacgtatcttgtctagaatatagaccaaatacatcatttatgcaatgaa 48195995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 44111858 - 44111801
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatca 276  Q
    |||||||||||||||||||||||||||| ||    ||||| |||||||||||||||||    
T  44111858 tttttagattcattgagtaattgatgtatcttctttagaatatagaccaaatacatca 44111801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 34226461 - 34226429
Alignment:
Q  258 aaatagaccaaatacatcaactattcaatgaat 290  Q
    |||||||||||||||||||| ||||||||||||    
T  34226461 aaatagaccaaatacatcaattattcaatgaat 34226429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 41116592 - 41116624
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgta 247  Q
    |||| ||||||||||||||||||||||||||||    
T  41116592 ttaactttttagattcattgagtaattgatgta 41116624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 215 - 328
Target Start/End: Original strand, 45571060 - 45571173
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  45571060 ttaactttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttata 45571159  T
Q  315 tataggaccagagg 328  Q
    ||||||||| ||||    
T  45571160 tataggaccggagg 45571173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 215 - 328
Target Start/End: Original strand, 45574727 - 45574840
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  45574727 ttaactttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttata 45574826  T
Q  315 tataggaccagagg 328  Q
    ||||||||| ||||    
T  45574827 tataggaccggagg 45574840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 215 - 328
Target Start/End: Original strand, 45578394 - 45578507
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  45578394 ttaactttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttata 45578493  T
Q  315 tataggaccagagg 328  Q
    ||||||||| ||||    
T  45578494 tataggaccggagg 45578507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 215 - 328
Target Start/End: Original strand, 45582061 - 45582174
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  45582061 ttaactttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttata 45582160  T
Q  315 tataggaccagagg 328  Q
    ||||||||| ||||    
T  45582161 tataggaccggagg 45582174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 215 - 328
Target Start/End: Original strand, 45585728 - 45585841
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  45585728 ttaactttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttata 45585827  T
Q  315 tataggaccagagg 328  Q
    ||||||||| ||||    
T  45585828 tataggaccggagg 45585841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 215 - 328
Target Start/End: Original strand, 45589395 - 45589508
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  45589395 ttaactttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttata 45589494  T
Q  315 tataggaccagagg 328  Q
    ||||||||| ||||    
T  45589495 tataggaccggagg 45589508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 215 - 328
Target Start/End: Original strand, 45593062 - 45593175
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  45593062 ttaactttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttata 45593161  T
Q  315 tataggaccagagg 328  Q
    ||||||||| ||||    
T  45593162 tataggaccggagg 45593175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 215 - 328
Target Start/End: Original strand, 45596729 - 45596842
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  45596729 ttaactttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttata 45596828  T
Q  315 tataggaccagagg 328  Q
    ||||||||| ||||    
T  45596829 tataggaccggagg 45596842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 215 - 328
Target Start/End: Original strand, 45600396 - 45600509
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  45600396 ttaactttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttata 45600495  T
Q  315 tataggaccagagg 328  Q
    ||||||||| ||||    
T  45600496 tataggaccggagg 45600509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 215 - 328
Target Start/End: Original strand, 45604063 - 45604176
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  45604063 ttaactttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttata 45604162  T
Q  315 tataggaccagagg 328  Q
    ||||||||| ||||    
T  45604163 tataggaccggagg 45604176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 215 - 328
Target Start/End: Original strand, 45607730 - 45607843
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  45607730 ttaactttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttata 45607829  T
Q  315 tataggaccagagg 328  Q
    ||||||||| ||||    
T  45607830 tataggaccggagg 45607843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 215 - 328
Target Start/End: Original strand, 45611397 - 45611510
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  45611397 ttaactttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttata 45611496  T
Q  315 tataggaccagagg 328  Q
    ||||||||| ||||    
T  45611497 tataggaccggagg 45611510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 215 - 328
Target Start/End: Original strand, 45615064 - 45615177
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  45615064 ttaactttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttata 45615163  T
Q  315 tataggaccagagg 328  Q
    ||||||||| ||||    
T  45615164 tataggaccggagg 45615177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 45034427 - 45034541
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    ||||| |||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  45034427 gttaactttttagattcattcaataattgatgtacctaacctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttat 45034526  T
Q  314 atataggaccagagg 328  Q
    |||||||||| ||||    
T  45034527 atataggaccggagg 45034541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 220 - 321
Target Start/End: Complemental strand, 4044687 - 4044586
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttatatatag 319  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  4044687 tttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttatatatag 4044588  T
Q  320 ga 321  Q
    ||    
T  4044587 ga 4044586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 4063301 - 4063415
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    |||||||||||||||||||| | |||||||||||||||  |||||||||||| ||||||||||||||||||||||||        |||||||||||||||    
T  4063301 gttaattttttagattcattcaataattgatgtacctactctagaaatagacaaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttat 4063400  T
Q  314 atataggaccagagg 328  Q
    |||||||||| ||||    
T  4063401 atataggaccggagg 4063415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 215 - 323
Target Start/End: Original strand, 15384457 - 15384565
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    |||| |||||||||| ||| | ||||||||||||||||| | ||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  15384457 ttaactttttagatttatttaataattgatgtacctagcttggaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttata 15384556  T
Q  315 tataggacc 323  Q
    |||||||||    
T  15384557 tataggacc 15384565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 214 - 322
Target Start/End: Complemental strand, 3838536 - 3838428
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    ||||| |||||||||||||| | | |||||||||| | | |||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  3838536 gttaactttttagattcattcaatgattgatgtacttcgtctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttat 3838437  T
Q  314 atataggac 322  Q
    |||||||||    
T  3838436 atataggac 3838428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 9152492 - 9152423
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatga 288  Q
    |||||||||||||||||||||||||||| |||| ||| || |||||||||||||||||| |||| |||||    
T  9152492 tttttagattcattgagtaattgatgtatctagtctaaaatatagaccaaatacatcaattatttaatga 9152423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 290
Target Start/End: Complemental strand, 38983114 - 38983041
Alignment:
Q  218 attttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    ||||||||||||||||| |||||||||||| || | |||||| |||||| ||||||||||  ||| ||||||||    
T  38983114 attttttagattcattgtgtaattgatgtatcttgtctagaatatagacaaaatacatcatttatgcaatgaat 38983041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 328
Target Start/End: Original strand, 12486027 - 12486136
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttatatata 318  Q
    ||||||| |||||||| ||||| ||| ||   |||||||| |||||||||||||||||| ||||||||||||        | ||||||||||| || |||    
T  12486027 tttttaggttcattgaataatttatggactcggcctagaatatagaccaaatacatcaattattcaatgaatctaaaaagtcaattgtttcttgtaaata 12486126  T
Q  319 ggaccagagg 328  Q
    ||||||||||    
T  12486127 ggaccagagg 12486136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 20555288 - 20555348
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacat 274  Q
    |||||||||||||| |||||| ||||||||||| || | |||||| |||||||||||||||    
T  20555288 ttaattttttagatacattgaataattgatgtatcttgtctagaatatagaccaaatacat 20555348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 32457326 - 32457255
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    |||||||||||||| ||||||||||||| || | |||||| |||||| ||||||||||  ||| ||||||||    
T  32457326 tttttagattcattaagtaattgatgtatcttgtctagaatatagactaaatacatcatttatgcaatgaat 32457255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 11030310 - 11030248
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatca 276  Q
    |||| |||||||||||||||||||||||||||| ||    ||||| |||||||||||||||||    
T  11030310 ttaactttttagattcattgagtaattgatgtatctgatatagaatatagaccaaatacatca 11030248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 43714086 - 43714016
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaat 290  Q
    |||||||||| | ||||||||||||||| || | ||| | ||||||||||||||| |  ||||||||||||    
T  43714086 tttttagatttactgagtaattgatgtatcttgtctaaatatagaccaaatacataatttattcaatgaat 43714016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 5559398 - 5559426
Alignment:
Q  220 tttttagattcattgagtaattgatgtac 248  Q
    |||||||||||||||||||||||||||||    
T  5559398 tttttagattcattgagtaattgatgtac 5559426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 34662711 - 34662825
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    ||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  34662711 gttaactttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttat 34662810  T
Q  314 atataggaccagagg 328  Q
    ||||| |||| ||||    
T  34662811 atataagaccggagg 34662825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 214 - 328
Target Start/End: Complemental strand, 43929464 - 43929350
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    ||||| |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||        |||||||||||||||    
T  43929464 gttaactttttagattcattcaataattgatgtacctagcttagaaatagaccaaatacatcaactatttaatgaatcaaaaaagtaaattgtttcttat 43929365  T
Q  314 atataggaccagagg 328  Q
    |||||||||| ||||    
T  43929364 atataggaccggagg 43929350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 215 - 328
Target Start/End: Complemental strand, 47678373 - 47678260
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    |||| |||| ||||||||| | ||||||||||||||| |||||||||||| |||||||||||||||||||||||||        ||||||||||||||||    
T  47678373 ttaacttttgagattcattcaataattgatgtacctaacctagaaatagatcaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttata 47678274  T
Q  315 tataggaccagagg 328  Q
    ||||||||| ||||    
T  47678273 tataggaccggagg 47678260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 215 - 321
Target Start/End: Original strand, 47844564 - 47844670
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    |||| |||| ||||||||| | ||||||||||||||| |||||||||||| |||||| ||||||||||||||||||        ||||||||||||||||    
T  47844564 ttaacttttgagattcattcaataattgatgtacctaacctagaaatagatcaaatatatcaactattcaatgaatcaaaaaagtaaattgtttcttata 47844663  T
Q  315 tatagga 321  Q
    |||||||    
T  47844664 tatagga 47844670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 290
Target Start/End: Complemental strand, 44939181 - 44939108
Alignment:
Q  218 attttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    |||||||||||||||||||||||||||||| |||  |||||| |||||||||||||||||  ||| ||||||||    
T  44939181 attttttagattcattgagtaattgatgtatctaatctagaatatagaccaaatacatcatttatacaatgaat 44939108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 328
Target Start/End: Original strand, 34332511 - 34332620
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttatatata 318  Q
    ||||||||||||||||||||||||||||  | | |||||| |||||||||||||||||  ||| ||||||||        | || ||||||||||| |||    
T  34332511 tttttagattcattgagtaattgatgtattttgtctagaatatagaccaaatacatcatttatccaatgaatcaaaaaagtcaaatgtttcttataaata 34332610  T
Q  319 ggaccagagg 328  Q
    ||||||||||    
T  34332611 ggaccagagg 34332620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 49944863 - 49944939
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    |||| |||||||||||||||| ||||||||||| || | |||||| |||||||||||||||||  ||| ||||||||    
T  49944863 ttaactttttagattcattgaataattgatgtatcttgtctagaatatagaccaaatacatcatttatacaatgaat 49944939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 38738049 - 38737988
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatc 275  Q
    |||| |||||||||||||||||||||||||||| || | |||||| ||| ||||||||||||    
T  38738049 ttaactttttagattcattgagtaattgatgtatcttgtctagaatataaaccaaatacatc 38737988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 274
Target Start/End: Complemental strand, 38590184 - 38590124
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacat 274  Q
    |||| |||||||||||||||||||||||||||| || |  ||||| |||||||||||||||    
T  38590184 ttaactttttagattcattgagtaattgatgtatctggtatagaatatagaccaaatacat 38590124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 50155411 - 50155339
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaatt 291  Q
    ||||||||||||||||||||||||||||  | | ||| || |||||||||||||||||  ||| |||||||||    
T  50155411 tttttagattcattgagtaattgatgtatttggtctataatatagaccaaatacatcatttatgcaatgaatt 50155339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 15342972 - 15343043
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    ||||||||||||||| |||||| ||||| || | |||||| |||||||||||||||||  ||| ||||||||    
T  15342972 tttttagattcattgtgtaattaatgtatcttgtctagaatatagaccaaatacatcatttatgcaatgaat 15343043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 26070859 - 26070914
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacat 274  Q
    |||||||||||||||||||||||||||| ||   |||||| |||||||||||||||    
T  26070859 tttttagattcattgagtaattgatgtatcttatctagaatatagaccaaatacat 26070914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 519951 - 519889
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatca 276  Q
    |||| |||||||||||||||||||||||||||| ||   |||||| ||||| |||||||||||    
T  519951 ttaactttttagattcattgagtaattgatgtatcttatctagaatatagatcaaatacatca 519889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 290
Target Start/End: Complemental strand, 26760288 - 26760215
Alignment:
Q  218 attttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    |||||||| ||||||||||| ||| |||||| | |  ||||| |||||||||||||||||  ||||||||||||    
T  26760288 attttttaaattcattgagtcattaatgtacttggtatagaatatagaccaaatacatcatttattcaatgaat 26760215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 290
Target Start/End: Original strand, 11386189 - 11386261
Alignment:
Q  219 ttttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    ||||||||||||||||| ||||||||||  || | |||||| |||||| ||||||||||  ||| ||||||||    
T  11386189 ttttttagattcattgaataattgatgtttctggtctagaatatagacgaaatacatcatttatgcaatgaat 11386261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 16536 - 16612
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaat 290  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16536 gttaattttttagattcattcaataattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaat 16612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 2810108 - 2810222
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    |||||||||||||||||||| | |||||||||||||||| |||||||||| ||||||||||||||||||||||||||        |||||| ||||||||    
T  2810108 gttaattttttagattcattcaataattgatgtacctagtctagaaatagtccaaatacatcaactattcaatgaatgaaaaaagtaaattatttcttat 2810207  T
Q  314 atataggaccagagg 328  Q
    |||||||||| ||||    
T  2810208 atataggaccggagg 2810222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 1837078 - 1837006
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaat 286  Q
    |||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1837078 gttaattttttagatttattcaataattgatgtacctagcctagaaatagaccaaatacatcaattattcaat 1837006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 8646791 - 8646721
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaat 290  Q
    |||||||||| ||| | ||||||||||||||| | |||||||||||||||| |||||||||||||||||||    
T  8646791 tttttagatttatttaataattgatgtacctaacttagaaatagaccaaatgcatcaactattcaatgaat 8646721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 2943315 - 2943386
Alignment:
Q  257 gaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttatatataggaccagagg 328  Q
    |||||||||||||||||||||||||| |||||||        ||||||||||||||||||||||||| ||||    
T  2943315 gaaatagaccaaatacatcaactatttaatgaatcaaaaaagtaaattgtttcttatatataggaccggagg 2943386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 2230462 - 2230391
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    |||||||||||||||||||||| ||||| || | |||||| ||||||||| |||||||  ||||||| ||||    
T  2230462 tttttagattcattgagtaattaatgtatcttgtctagaatatagaccaagtacatcatttattcaacgaat 2230391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 27909009 - 27909082
Alignment:
Q  220 tttttagattca-ttgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaatt 291  Q
    |||||||||||| |||||||||||||||| |  | ||| || ||||| |||||||||||| |||||||||||||    
T  27909009 tttttagattcaattgagtaattgatgtatccggtctaaaatatagatcaaatacatcaattattcaatgaatt 27909082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 290
Target Start/End: Original strand, 30627856 - 30627929
Alignment:
Q  218 attttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    |||||||| ||| ||||||||||||||||| || | ||| || |||||||||||||||||  ||| ||||||||    
T  30627856 attttttatatttattgagtaattgatgtatcttgtctaaaatatagaccaaatacatcatttatgcaatgaat 30627929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 7649834 - 7649906
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaatt 291  Q
    |||||||||||||||| |||||||||||  | | ||| || ||| |||||||| ||||| |||||||||||||    
T  7649834 tttttagattcattgaataattgatgtatttggtctaaaatatataccaaataaatcaattattcaatgaatt 7649906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 214 - 322
Target Start/End: Complemental strand, 29457958 - 29457850
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    ||||| |||||||||||||| | | |||||||||||||| |||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  29457958 gttaactttttagattcattcaatgattgatgtacctagtctagaaatagaccaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttat 29457859  T
Q  314 atataggac 322  Q
    |||||||||    
T  29457858 atataggac 29457850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 214 - 323
Target Start/End: Original strand, 33371890 - 33371999
Alignment:
Q  214 gttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttat 313  Q
    |||||||||||| ||| ||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||        |||||| ||||||||    
T  33371890 gttaattttttaaatttattcaataattgatgtacctagcctaaaaatagaccaaatacatcaactattcaatgaatcaaaaaaataaattatttcttat 33371989  T
Q  314 atataggacc 323  Q
    ||||||||||    
T  33371990 atataggacc 33371999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 215 - 319
Target Start/End: Original strand, 49885409 - 49885513
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttata 314  Q
    ||||||||||||||||||| | ||||||||||| |||| |||||||||||||||||||||||| ||| || | |||        ||||||||||||||||    
T  49885409 ttaattttttagattcattcaataattgatgtatctagtctagaaatagaccaaatacatcaattatccacttaatcaaaaaagtaaattgtttcttata 49885508  T
Q  315 tatag 319  Q
    |||||    
T  49885509 tatag 49885513  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 5177883 - 5177817
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactat 281  Q
    |||| |||||||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||    
T  5177883 ttaactttttagattcattcaataattgatgtacctaacttagaaatagaccaaatacatcaactat 5177817  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 221 - 323
Target Start/End: Complemental strand, 54087509 - 54087407
Alignment:
Q  221 ttttagattcattgagtaattgatgtacctagcctagaaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttatatatagg 320  Q
    ||||| ||||||| | ||||| ||||||||| | ||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||| |    
T  54087509 ttttaaattcattcaataattaatgtacctaacgtagaaatagacaaaatacatcaactattcaatgaatcaaaaaagtaaattgtttcttatatataag 54087410  T
Q  321 acc 323  Q
    |||    
T  54087409 acc 54087407  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 32711315 - 32711245
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaa 289  Q
    |||||||||||||||| ||||||||||| || | ||| || |||| ||||||||||||| |||||||||||    
T  32711315 tttttagattcattgaataattgatgtatctggtctataatataggccaaatacatcaattattcaatgaa 32711245  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 290
Target Start/End: Complemental strand, 19649694 - 19649621
Alignment:
Q  218 attttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    ||||||||||||||||||||||||||||||    | ||| || |||||| ||||||||||| ||||||||||||    
T  19649694 attttttagattcattgagtaattgatgtattcggtctaaaatatagactaaatacatcaattattcaatgaat 19649621  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 48593177 - 48593248
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatcaactattcaatgaat 290  Q
    ||||||||| |||||| ||||||||||| |  | |||||| ||||||||||||||| || ||||||||||||    
T  48593177 tttttagatacattgaataattgatgtatcgggtctagaatatagaccaaatacataaattattcaatgaat 48593248  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 54537478 - 54537532
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaataca 273  Q
    |||| ||||||||||||||||||||||| |||| |||||| ||||| ||||||||    
T  54537478 ttttaagattcattgagtaattgatgtatctagtctagaatatagatcaaataca 54537532  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 23223071 - 23223014
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatca 276  Q
    |||||||||||||||||||| ||||||| || | ||| || |||||||||||||||||    
T  23223071 tttttagattcattgagtaactgatgtatcttgtctaaaatatagaccaaatacatca 23223014  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 44518071 - 44518128
Alignment:
Q  220 tttttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacatca 276  Q
    |||||||||||||||||||||| ||||| || | ||| || |||||||||||||||||    
T  44518071 tttttagattcattgagtaattaatgtatcttgtctaaaatatagaccaaatacatca 44518128  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 8266263 - 8266295
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgta 247  Q
    |||| ||||||||||||||||||||||||||||    
T  8266263 ttaactttttagattcattgagtaattgatgta 8266295  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 43448991 - 43449063
Alignment:
Q  218 attttttagattcattgagtaattgatgtacctagccta-gaaatagaccaaatacatcaactattcaatgaa 289  Q
    ||||||||||||||||||||||||||| || || | ||| || ||| |||||||||||||  ||| |||||||    
T  43448991 attttttagattcattgagtaattgatatatcttgtctatgatataaaccaaatacatcatttatacaatgaa 43449063  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 52864981 - 52865013
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgta 247  Q
    |||| ||||||||||||||||||||||||||||    
T  52864981 ttaactttttagattcattgagtaattgatgta 52865013  T

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Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 7198 - 7261
Alignment:
Q  258 aaatagaccaaatacatcaactattcaatgaattnnnnnnntaaattgtttcttatatatagga 321  Q
    ||||||||||||||||||||||||| |||||||        |||||||||||||||||||||||    
T  7198 aaatagaccaaatacatcaactatttaatgaatcaaaaaagtaaattgtttcttatatatagga 7261  T

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Target: scaffold0236 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 16762 - 16709
Alignment:
Q  222 tttagattcattgagtaattgatgtacctagcctagaa-atagaccaaatacat 274  Q
    |||| ||||||||||||||||||||| || | |||||| |||||||||||||||    
T  16762 tttaaattcattgagtaattgatgtatcttgtctagaatatagaccaaatacat 16709  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 1650 - 1618
Alignment:
Q  215 ttaattttttagattcattgagtaattgatgta 247  Q
    ||||||||||||||||||||| |||||||||||    
T  1650 ttaattttttagattcattgaataattgatgta 1618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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