View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1600_high_6 (Length: 339)
Name: NF1600_high_6
Description: NF1600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1600_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 31061535 - 31061858
Alignment:
| Q |
1 |
aagatcaagtatctcatcatccgaaaaaccaaataaaatcataaaatatctgaggagaattagagagcaatgactcatcaatagcatcactaagatactc |
100 |
Q |
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| T |
31061535 |
aagatcaagtatctcatcatccgaaaaaccaaataaaatcataaaatatctgaggagaatcagagagcaatgattcatcaatagcatcactaagatactc |
31061634 |
T |
|
| Q |
101 |
ctaattttgattacctgcctcaccttgtggagctacctcaataaaattattaaatcaagcaaagtggatatatatgcataattgtcttctttgcttgatt |
200 |
Q |
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| T |
31061635 |
ctaattttgattacatgcctcaccttgtggagctacctcaataaaattattaaatcaagcaaagtggatatatatgcataattgtcttctttgcttgatt |
31061734 |
T |
|
| Q |
201 |
gaactcccgttaattgaactgcttgaccatcctgcatatcatctaagatcattctgttccaaatagttacaaaatatcatcaatgtcatttgcatcagtc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
31061735 |
gaactcccgttaattgaactgcttgaccatcctgcatatcatctaagatcattctgttccaaatagttagaaaatatcatcaatgtcatttgcattagtc |
31061834 |
T |
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| Q |
301 |
aaagcaacgatagtgttaattagt |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
31061835 |
aaagcaacgatagtgttaattagt |
31061858 |
T |
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