View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1600_high_8 (Length: 250)
Name: NF1600_high_8
Description: NF1600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1600_high_8 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 18439237 - 18439475
Alignment:
| Q |
1 |
tcaaaacatgtgtcgaaggcatttagtttgtgactgttattttcagttacttaataataatatatatagtagttttgtataggaaaataggggtcacaaa |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18439237 |
tcaaaatatgtgtcgaaggcatttagtttgtgactgttattttcagttacttaataatagtatatatagtagttttgtataggaaaataggggtcacaaa |
18439336 |
T |
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| Q |
101 |
tcagtatacataatcctctagctaaaaatattcaagttaaaacgagaaaagagtaacaagagaatttatatatgatttgatgtatcaatctttatttatg |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
18439337 |
tcaaaatacataatcctctagctaaaaatattcaagttaaaacgagaaaagagtaacaagagaatgtgtatatgatttgatgtatcaatctttatttatg |
18439436 |
T |
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| Q |
201 |
ctataaaaatgcttttctttttaagttgtttactttcat |
239 |
Q |
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| T |
18439437 |
ctataaaaatgcttttctttttaagttgtttactttcat |
18439475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 18450095 - 18450333
Alignment:
| Q |
1 |
tcaaaacatgtgtcgaaggcatttagtttgtgactgttattttcagttacttaataataatatatatagtagttttgtataggaaaataggggtcacaaa |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18450095 |
tcaaaatatgtgtcgaaggcatttagtttgtgactgttattttcagttacttaataatagtatatatagtagttttgtataggaaaataggggtcacaaa |
18450194 |
T |
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| Q |
101 |
tcagtatacataatcctctagctaaaaatattcaagttaaaacgagaaaagagtaacaagagaatttatatatgatttgatgtatcaatctttatttatg |
200 |
Q |
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| T |
18450195 |
tcaaaatacataatcctctagctaaaaatattcaagttaaaacgagaaaagagtaacaagagaatgtgtatatgatttgatgtatcaatctttatttatg |
18450294 |
T |
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| Q |
201 |
ctataaaaatgcttttctttttaagttgtttactttcat |
239 |
Q |
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| T |
18450295 |
ctataaaaatgcttttctttttaagttgtttactttcat |
18450333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 18455188 - 18455282
Alignment:
| Q |
1 |
tcaaaacatgtgtcgaaggcatttagtttgtgactgttattttcagttacttaataataatatatatagtagttttgtataggaaaataggggtc |
95 |
Q |
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| T |
18455188 |
tcaaaatatgtgtcgaaggcatttagtttgtgactgttattttcagttacttaataatagtatatatagtagttttgtataggaaaataggggtc |
18455282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 23739557 - 23739509
Alignment:
| Q |
1 |
tcaaaacatgtgtcgaaggcatttagtttgtgactgttattttcagtta |
49 |
Q |
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| T |
23739557 |
tcaagacatgtgtcgaaggcatttattttgtgacttttattttcagtta |
23739509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 113611 - 113659
Alignment:
| Q |
1 |
tcaaaacatgtgtcgaaggcatttagtttgtgactgttattttcagtta |
49 |
Q |
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| T |
113611 |
tcaagacatgtatcgaaagcatttagtttgtgaccgtcattttcagtta |
113659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 8685 - 8783
Alignment:
| Q |
144 |
gagaaaagagtaacaagagaatttatatatgatttgatgtatcaatctttatttatgctataaaaatgcttttctttttaagttg-tttactttcatctc |
242 |
Q |
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| T |
8685 |
gagaaaagagtaacaagaaaatgtatgtatgatttaatgtaccagtttacatttatgcaatcataatgcttttc-ttttaatttgttttactttcatctc |
8783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 56367758 - 56367854
Alignment:
| Q |
85 |
aaataggggtcacaaatcagtatacataatcctctag-ctaaaaatattcaagttaaaacgagaaaagagtaacaagagaatttatatatgatttgat |
181 |
Q |
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| T |
56367758 |
aaataggggtcacaaatcaa-atacataatcctttatactcaaagtatccaagttacaacaagaaaagagtaacgagataatgtatgtgtgatttgat |
56367854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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