View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1600_high_9 (Length: 250)
Name: NF1600_high_9
Description: NF1600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1600_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 38028612 - 38028784
Alignment:
| Q |
8 |
gagcagagacatcaaggtgagggaaaaatggtgatgctatctaagagtagcacaacaaaaagtttcaatatctgcacaatcttgttgtcgttcatagact |
107 |
Q |
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| T |
38028612 |
gagcagaggcatcaaggtgagggaaaaatagtgatgctatctaagagtagcacaacaaaaagtttcaatatctgcacaatcttgttgtcgttcatagact |
38028711 |
T |
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| Q |
108 |
tattaacactccactctaaaaatggatcagatcaaagagtttttaatggaaacacaaaacaagtaagaaagca |
180 |
Q |
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| T |
38028712 |
tattaacactccactctaaaaatggatcagatcaaagagtttttaatggaaacacaaaacaagtaaggaagca |
38028784 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 15150883 - 15150837
Alignment:
| Q |
181 |
attaagattaaaattaagcaataacaaataacggaaagtgaaaacta |
227 |
Q |
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| T |
15150883 |
attaagattaaaatattgcaataacaaataacagaaagtgaaaacta |
15150837 |
T |
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