View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1600_low_4 (Length: 439)
Name: NF1600_low_4
Description: NF1600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1600_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 8296948 - 8297308
Alignment:
| Q |
1 |
gaattttcagaatcttaaatacagagtttttcatgcttcaaactgaaattaacaaggcaagaaattttactagagataaatccgcataaagcttttgaga |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8296948 |
gaattttcagaatgttaaatacagagtttttcatgcttcaaactgaaattaacaaggcaagaaattttactagagataaatccgcataaagcttttgaga |
8297047 |
T |
|
| Q |
101 |
aaattcattttaccctccatagtttgcatttcaactctgatactttctaagttcccttttaattccattctatcctcaatagacttgatagactcgagaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8297048 |
aaattcattttaccctccatagtttgcatttcaactctgatactttctaagttcccttttaattccattctatcctccatagacttgatagactcgagaa |
8297147 |
T |
|
| Q |
201 |
aattcagcatcaagtttttgaaatatctaataaacaccaaagaattatccatcacagccaccttaattatcatccatttttcgtcaagactatccagatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| |
|
|
| T |
8297148 |
aattcagcatcaagtttttgaaatatctaataaacaccaaagaattatccatcacagccaccttaattatcatccatttttcatccagattatccagatt |
8297247 |
T |
|
| Q |
301 |
ttctcccttcttctcgaattgtttctctttttccataaatttaattagctcagccaacaca |
361 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||| || ||||||||||||||||| |
|
|
| T |
8297248 |
ttctcccttcttctccaattgtttcgctttttccataaatgtatttagctcagccaacaca |
8297308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 2 - 361
Target Start/End: Original strand, 8300519 - 8300886
Alignment:
| Q |
2 |
aattttcagaatcttaaatacagagtttttcatgcttcaaact--------gaaattaacaaggcaagaaattttactagagataaatccgcataaagct |
93 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| ||| || ||||| | |
|
|
| T |
8300519 |
aattttcagaatattaaagacagagtttttcattcttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagatagatctgcgtaaagat |
8300618 |
T |
|
| Q |
94 |
tttgagaaaattcattttaccctccatagtttgcatttcaactctgatactttctaagttcccttttaattccattctatcctcaatagacttgatagac |
193 |
Q |
| |
|
|| |||| | |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
8300619 |
ttcgagacacttcattttgtactccatagtttgcatttcaactctgatactttctgagttcccttttaattccactctatcctccatagacttgatagac |
8300718 |
T |
|
| Q |
194 |
tcgagaaaattcagcatcaagtttttgaaatatctaataaacaccaaagaattatccatcacagccaccttaattatcatccatttttcgtcaagactat |
293 |
Q |
| |
|
|| |||||||||||| | |||||||||| |||||||| ||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8300719 |
tcaagaaaattcagcgtaaagtttttgatatatctaacaaacagcaaagaattatccaacacaaccaccttaattatcatccatttttcgtcaagactat |
8300818 |
T |
|
| Q |
294 |
ccagattttctcccttcttctcgaattgtttctctttttccataaatttaattagctcagccaacaca |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8300819 |
ccagattttctcccttcttctcgaattgtttctctttttccataaatttaattagctcagccaacaca |
8300886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 44 - 361
Target Start/End: Complemental strand, 18279659 - 18279339
Alignment:
| Q |
44 |
tgaaattaacaaggcaagaaattttactagagataaatccgcataa---agcttttgagaaaattcattttaccctccatagtttgcatttcaactctga |
140 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| | ||||||| ||||||||||| |||||| ||| |||||||||||||| |||||||| ||| |
|
|
| T |
18279659 |
tgaaattaacaagccaagaaattttactcgagataagtacgcataataaagcttttgagacaattcaaattatcctccatagtttgcttttcaactttga |
18279560 |
T |
|
| Q |
141 |
tactttctaagttcccttttaattccattctatcctcaatagacttgatagactcgagaaaattcagcatcaagtttttgaaatatctaataaacaccaa |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| | ||| |||||| ||||| |||| || ||| |
|
|
| T |
18279559 |
cactttctaagttcccttttaattccattctatcctccaaagacttaatagactcgagaaaattcagcgtaaagcttttgatatatccaatatacgtcaa |
18279460 |
T |
|
| Q |
241 |
agaattatccatcacagccaccttaattatcatccatttttcgtcaagactatccagattttctcccttcttctcgaattgtttctctttttccataaat |
340 |
Q |
| |
|
| |||||| | | ||||| || ||||||||||||| | | |||||| ||||||||||||| |||||||||| ||||| || ||||||||||||||| |
|
|
| T |
18279459 |
aatattatcaaactttgccacattgattatcatccattgtacatcaagattatccagattttcaaccttcttctccaattgattatctttttccataaat |
18279360 |
T |
|
| Q |
341 |
ttaattagctcagccaacaca |
361 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
18279359 |
ttatttagctcagccaacaca |
18279339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 1145145 - 1145356
Alignment:
| Q |
2 |
aattttcagaatcttaaatacagagtttttcatgcttcaaact--------gaaattaacaaggcaagaaattttactagagataaatccgcataaagct |
93 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
1145145 |
aattttcagaatattaaa--cagagtttttcatgcttcaaactttgaaaatgaaattaaccaggcaagatattttactcgagataaatccgcataaagct |
1145242 |
T |
|
| Q |
94 |
tttgagaaaattcattttaccctccatagtttgcatttcaactctgatactttctaagttcccttttaattccattctatcctcaatagacttgatagac |
193 |
Q |
| |
|
|| ||| || |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |
|
|
| T |
1145243 |
ttcgagccaaatcattttatcctccatagtttgcatttcaattctgatactttctaagttcccttttaattccattctatcctccagatacttgatagac |
1145342 |
T |
|
| Q |
194 |
tcgagaaaattcag |
207 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1145343 |
tcgagaaaattcag |
1145356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 21120586 - 21120537
Alignment:
| Q |
114 |
cctccatagtttgcatttcaactctgatactttctaagttcccttttaat |
163 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||| | |||||| |
|
|
| T |
21120586 |
cctccatagtttgcatttcaactctgagactttccaagttctcgtttaat |
21120537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University