View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1600_low_5 (Length: 349)
Name: NF1600_low_5
Description: NF1600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1600_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 48 - 333
Target Start/End: Complemental strand, 25932135 - 25931850
Alignment:
| Q |
48 |
ttgctattataaataccctagtcaaggacacttgtcaaatagtaaaagtgtataaaactcgggagtataaatcaaacatttcagtgtgagcacaaaaaga |
147 |
Q |
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| T |
25932135 |
ttgctattataaatacccaagtcaaggacacttgtcaaatagaaaaagtgtataaaatttgagagtataaatcaaacatttcagtgtgagcacaaaaaga |
25932036 |
T |
|
| Q |
148 |
gagaggggtgatatgatggagatagcaatgaacaagttatattggacagtgtggatgatagtgataaccagtgttacgatattgttggagaaagtgttgc |
247 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
25932035 |
gagaggggtgatatcatggagatagcaatgaacaagttatattggacagtgtggatgatagtgataaccagtgttataatattgttggagaaagtgttac |
25931936 |
T |
|
| Q |
248 |
tgaagccacgaaggattcgatcggtgcttgaaaaacaaggtatcaaaggaccaaagccttctttcccatttggtaacatttctgag |
333 |
Q |
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| T |
25931935 |
tgaagccacgaaggattcgatcggtgcttgaaaaacaaggtatcaaaggaccaaagccttctttcccatttggtaacatttctgag |
25931850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 334
Target Start/End: Original strand, 26132597 - 26132720
Alignment:
| Q |
211 |
ataaccagtgttacgatattgttggagaaagtgttgctgaagccacgaaggattcgatcggtgcttgaaaaacaaggtatcaaaggaccaaagccttctt |
310 |
Q |
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|||| |||||||| | |||||| |||||||||||| | | || ||||||||||||| | |||| ||||||||||||||||| |||||||| ||||||| |
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| T |
26132597 |
ataagcagtgttataacattgttagagaaagtgttgttaacaccgcgaaggattcgattgatgctggaaaaacaaggtatcaatggaccaaaaccttctt |
26132696 |
T |
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| Q |
311 |
tcccatttggtaacatttctgagt |
334 |
Q |
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| T |
26132697 |
ttctctttggtaacatttcagagt |
26132720 |
T |
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