View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16010_high_12 (Length: 323)
Name: NF16010_high_12
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_high_12 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 11779509 - 11779801
Alignment:
| Q |
12 |
tgagatgaaggtgtttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatg |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11779509 |
tgaggtgaaggtgtttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatg |
11779608 |
T |
|
| Q |
112 |
taagtgcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11779609 |
taagtgcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaat |
11779708 |
T |
|
| Q |
212 |
atgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11779709 |
atgaagtgattgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaaatgct |
11779801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 11771763 - 11771484
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca |
124 |
Q |
| |
|
||||||||| || ||||||||||||||| |||||| || || | ||||| || |||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11771763 |
tttctaaaacattaatggaatccagactactacaaccatctatggtaagtgatttgagcgcagggaaaccatcaagtggaaaggatgtaagtgcatcaca |
11771664 |
T |
|
| Q |
125 |
actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11771663 |
actactccataaataaagactcacaagtgaagtgtaatagctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtatttgc |
11771564 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11771563 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
11771484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 10129454 - 10129175
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca |
124 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | || | ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10129454 |
tttctgaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcaagtggaaaggatgtaagtgcatcaca |
10129355 |
T |
|
| Q |
125 |
actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc |
224 |
Q |
| |
|
|||||||| ||||| || |||||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||| | || |||||||||||||||| |
|
|
| T |
10129354 |
actactccgtaaatcaatactcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacatttttcaatatgaagtgattgc |
10129255 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
10129254 |
aatgaagtgggtagtccacttgagggaaatgcagtgagagaagaaagagaatagagtctcaagtgtgtaagacaagtgct |
10129175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 9841387 - 9841108
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca |
124 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| || | ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9841387 |
tttctgaaatataaatggaatctagactcctacaatcaagtatggtaagtgtttggagcgcagggaaaccatcaagtgggaaggatgtaagtgtatcaca |
9841288 |
T |
|
| Q |
125 |
actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc |
224 |
Q |
| |
|
|| | |||||| | ||||||||||||||| |||||||||||||||||||||| |||||| |||||||| ||||||||| |||||||||||||||| |
|
|
| T |
9841287 |
gctccaccataactgaagactcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacaactacgaatatgaagtgattgc |
9841188 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
9841187 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagagaatcgagtctcaagtgtgtaagacaagtgct |
9841108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 10034532 - 10034253
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca |
124 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| | || | |||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10034532 |
tttctgaaatataaatggaaaccagactcctacaattccatatctgaagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgcatcaca |
10034433 |
T |
|
| Q |
125 |
actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc |
224 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||| | | |||||||||||||||| |
|
|
| T |
10034432 |
actatgaattaaataaagactcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacattttacaatatgaagtgattgc |
10034333 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |
|
|
| T |
10034332 |
aatgaagtgggtagtccacttgagggaaatgcagtgagagaagaaagagaattgagttccaagtgtgtaagacaagtgct |
10034253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 25 - 304
Target Start/End: Original strand, 10431581 - 10431860
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca |
124 |
Q |
| |
|
||||| |||||||||||||||||||||| || |||| | || ||||||| |||||| ||||||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
10431581 |
tttctgaaatataaatggaatccagacttctgcaattaaatatgtcaagtaattggagggcagggaaaccatcgagtggaaaggatgtaagtgaatcaca |
10431680 |
T |
|
| Q |
125 |
actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc |
224 |
Q |
| |
|
||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||| |||||||| | || ||| | |||||||||| |
|
|
| T |
10431681 |
actgctccataaataaagactgacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacatttttcaatttcaagtgattgc |
10431780 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
10431781 |
aatgaagtgggtagaccacttgatggaaatgcagtgagagaagaaagagaatcgagtctcaagtgtgtaagacaagtgct |
10431860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 10520014 - 10519735
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca |
124 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || |||| || | ||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
10520014 |
tttctgaaatataaatggaatccagactcctgcactcacatatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgtatcaca |
10519915 |
T |
|
| Q |
125 |
actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc |
224 |
Q |
| |
|
|||| | || | ||||||||||||||| ||||||||| |||||||||||| ||| || |||||||| ||||||||| || ||||| |||||||||| |
|
|
| T |
10519914 |
gctacgatagaacttaagactcacaagtgatgtgtaattgatccacgtttcaggaggaaggaaggataaattctcacaacattgaatattaagtgattgc |
10519815 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
10519814 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagagaatcgagtcccaagtgtgtaagacaagtgct |
10519735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 9852268 - 9851989
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||| | |||||||||||||||||||||||||||||| ||||| |||||| |||||| |||||| |
|
|
| T |
9852268 |
tttctaaaatataaatggaatccagacttctccaatcatcaatgtcaagtgtttggagcacagggaaaccatcgagtggaaaggatttaagtgaatcaca |
9852169 |
T |
|
| Q |
125 |
actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc |
224 |
Q |
| |
|
|||| | || ||||||||||||||| ||||| |||||||| ||||||| |||||| |||||||| |||||||||| || ||||| |||||||||| |
|
|
| T |
9852168 |
gctacgatagaaccgaagactcacaagtgatgtgtagttgctccatgtttcaggaggtaggaaggataaattctcacaattttcaatatcaagtgattgc |
9852069 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||| |||| ||||||||||| ||||||||||||||| |
|
|
| T |
9852068 |
aatgaagtgggtagaccacttgatggaaatgcattgagagaagaaagtgaatcgagtctcaagtgtgtaagacaagtgct |
9851989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 71 - 304
Target Start/End: Complemental strand, 10583094 - 10582861
Alignment:
| Q |
71 |
aagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccac |
170 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| ||||||||||||| |||||| |||| | || ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
10583094 |
aagtgttcggagcgcagggaaaccatcaagtggaaaggatgtaagtgaatcacagctacgatagaactaaagactcacaagtgatgtgtagttgctccac |
10582995 |
T |
|
| Q |
171 |
gtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaa |
270 |
Q |
| |
|
||||||| |||||| |||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
10582994 |
gtttcaggaggtaggaaggataaattctcacaattttcgatatgaagtgattgcaatgaagtgggtagaccacttgagggaaatgtagtgagagaagaaa |
10582895 |
T |
|
| Q |
271 |
gagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| |
|
|
| T |
10582894 |
gagaatagagtctcaagtgtgtaagacaagtgct |
10582861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 25 - 304
Target Start/End: Original strand, 10361341 - 10361620
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca |
124 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| || | ||||||| ||||| ||||||||||||| ||||| ||||||||||||| | |||| |
|
|
| T |
10361341 |
tttctgaaatataaatggaatccagactcctacaatcacgtatggtaagtgttcggagcgcagggaaaccatcgagtggaaaggatgtaagtgaaccaca |
10361440 |
T |
|
| Q |
125 |
actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc |
224 |
Q |
| |
|
||| ||||| ||| |||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||||| || |||||||||||||||| |
|
|
| T |
10361441 |
gctatgatctaaatgtagagtcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacaattttcaatatgaagtgattgc |
10361540 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| |||| ||||||||||||||| |
|
|
| T |
10361541 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagattaccgagtcccaagagtgtaagacaagtgct |
10361620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 10666004 - 10665716
Alignment:
| Q |
16 |
atgaaggtgtttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaag |
115 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
10666004 |
atgaaggactttctaaaatacaaatggaaaccagactcctacaattctgtatccaaagtgtttggagcgcagggaaaccatcaagtggaaaggatgtaag |
10665905 |
T |
|
| Q |
116 |
tgcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatga |
215 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||| ||||| | |
|
|
| T |
10665904 |
tgcatcacaactttgacataaatctagacgcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacaccacaaaatatta |
10665805 |
T |
|
| Q |
216 |
agtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||||||||| |
|
|
| T |
10665804 |
agtgattgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagtgaatagagtgccaagtgtgtaagacaagtgct |
10665716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 10263230 - 10262951
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | | || ||||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
10263230 |
tttctaaaatataaatggaatccagacttctacacttatatatgtcaagtgtttggagggcagggaaaccatcgagtggaaaggatgtaagtgaatcaca |
10263131 |
T |
|
| Q |
125 |
actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc |
224 |
Q |
| |
|
|||| ||| | ||||||||||||||| |||||||||||||||||||||| ||| || |||||||| |||||||||| | ||| | |||||||||| |
|
|
| T |
10263130 |
gctacgatttaactcaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattctcacaatttacaatttcaagtgattgc |
10263031 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||| ||||||| |||| |||||| ||| ||||||||||| |
|
|
| T |
10263030 |
aatgaagtgggtagaccacttgagggaaatgtagtgagagaaggaagagaactgagtttcaagtgtgttagacaagtgct |
10262951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 25 - 304
Target Start/End: Original strand, 10373382 - 10373661
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca |
124 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||||||| || |||||||||||| |||||||||||||||||||| |||||| |||||| |||||| |
|
|
| T |
10373382 |
tttctgaaatacaaatggaatccagattcctacaattcagtatcataagtgtttggaggacagggaaaccatcaagtggaaaggatataagtgaatcaca |
10373481 |
T |
|
| Q |
125 |
actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc |
224 |
Q |
| |
|
|||| |||||||||| | ||||||||| ||||||||||||||| ||||| ||| || |||||||| |||||||| | | |||| | |||||||||| |
|
|
| T |
10373482 |
gctacgatataaataaagccacacaagtgatgtgtaattgctccacatttcaagaggaaggaaggataaattctcacagtatctaatttcaagtgattgc |
10373581 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |
|
|
| T |
10373582 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagagaatcgagttccaagtgtgtaagacaagtgct |
10373661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 10091323 - 10091044
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca |
124 |
Q |
| |
|
||||||||| || ||||||||||||||| |||||| || || | ||||| || |||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10091323 |
tttctaaaacattaatggaatccagactactacaaccatctatggtaagtgatttgagcgcagggaaaccatcaagtggaaaggatgtaagtgcatcaca |
10091224 |
T |
|
| Q |
125 |
actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc |
224 |
Q |
| |
|
||| | ||||||||| ||||||||||| |||||||||||||||||||||| |||||| |||||||| ||| |||| || ||| | || ||||||| |
|
|
| T |
10091223 |
gctatgacttaaataaagtctcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattcaaacaaaattcaatttcaattgattgc |
10091124 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| | || ||| |||||||||| |||| |||||| | |||||||||||| |
|
|
| T |
10091123 |
aatgaagtgggtagaccacttgagggtaatgcggcgatagatgaaagagaatagagtttcaagtgttgaagacaagtgct |
10091044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 10198205 - 10197926
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca |
124 |
Q |
| |
|
||||||||| || ||||||||||||||| |||||| || || | ||||| || |||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10198205 |
tttctaaaacattaatggaatccagactactacaaccatctatggtaagtgatttgagcgcagggaaaccatcaagtggaaaggatgtaagtgcatcaca |
10198106 |
T |
|
| Q |
125 |
actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc |
224 |
Q |
| |
|
||| | ||||||||| ||||||||||| |||||||||||||||||||||| |||||| |||||||| ||| |||| || ||| | || ||||||| |
|
|
| T |
10198105 |
gctatgacttaaataaagtctcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattcaaacaaaattcaatttcaattgattgc |
10198006 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| | || ||| |||||||||| |||| |||||| | |||||||||||| |
|
|
| T |
10198005 |
aatgaagtgggtagaccacttgagggtaatgcggcgatagatgaaagagaatagagtttcaagtgttgaagacaagtgct |
10197926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 265
Target Start/End: Original strand, 13853001 - 13853241
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca |
124 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| ||||||| |||| ||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13853001 |
tttctaaaatattaatggaatccagattcctacactcacttatccgaagtctttggagtgcagggaaaccatcaagttggaaggatgtaagtgcatcaca |
13853100 |
T |
|
| Q |
125 |
actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc |
224 |
Q |
| |
|
||||||| |||| ||||||| |||| || |||||||||||||| ||||||| ||| || || ||||| |||||||| | || || | |||||||||| |
|
|
| T |
13853101 |
gctactccgtaaagtaagactcgcaagcgatgtgtaattgctccatgtttcaggaggaaggaatgataaattctcacatttttctatttcaagtgattgc |
13853200 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagaga |
265 |
Q |
| |
|
|||| ||| || |||||||||| |||||| |||||||||| |
|
|
| T |
13853201 |
aatggagttggcagaccacttgacggaaatacagtgagaga |
13853241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 37 - 242
Target Start/End: Complemental strand, 10503099 - 10502894
Alignment:
| Q |
37 |
aaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcacaactactccataa |
136 |
Q |
| |
|
|||||||||||| | ||||||| | ||| | || |||| ||||||| ||||||||||||||||||| |||||||| ||| ||||||| ||||||||||| |
|
|
| T |
10503099 |
aaatggaatccaaattcctacagttactaatgttaagtctttggagtgcagggaaaccatcaagtggaaaggatgttagtccatcacagctactccataa |
10503000 |
T |
|
| Q |
137 |
ataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggt |
236 |
Q |
| |
|
|| |||||||||||| | |||||||||||||||||||||| ||| ||||||||||| |||||||| ||||||| |||||| ||||| ||||||||| |
|
|
| T |
10502999 |
atcaagactcacaagcaatgtgtaattgctccacgtttcagcaggaagaaaggataaattctcacaccttttaatactaagtgactgcaaagaagtgggt |
10502900 |
T |
|
| Q |
237 |
agacca |
242 |
Q |
| |
|
|||||| |
|
|
| T |
10502899 |
agacca |
10502894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 85 - 242
Target Start/End: Complemental strand, 10531130 - 10530973
Alignment:
| Q |
85 |
cagggaaaccatcaagtgggaaggatgtaagtgcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtag |
184 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||| |||| || ||||| ||||||||||||||| ||| | |
|
|
| T |
10531130 |
cagggaaaccatcaagttggaaggatgtaagtgcatcacagctactccataaaataagactctcaagcgatgtgtatctgctccacgtttcaggaggcat |
10531031 |
T |
|
| Q |
185 |
aaaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggtagacca |
242 |
Q |
| |
|
|| | ||| |||||||||| | |||| |||||| ||||||||||||||||||||| |
|
|
| T |
10531030 |
gaatgctaacttctcacaattatcaatacaaagtgactgcaatgaagtgggtagacca |
10530973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 10679929 - 10679837
Alignment:
| Q |
85 |
cagggaaaccatcaagtgggaaggatgtaagtgcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccacgtttcag |
177 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||| || || || ||||||||||||||| |
|
|
| T |
10679929 |
cagggaaaccatcaagttggaaggatgtaagtgcatcacagctactccataaaataagactcacaagcgatgtatatctgctccacgtttcag |
10679837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 265
Target Start/End: Original strand, 11244175 - 11244303
Alignment:
| Q |
137 |
ataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggt |
236 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||||||||||| |||||| || | |||| | ||||||| ||||||||||| |||||| ||||||||| |
|
|
| T |
11244175 |
ataaagagccaccagtgatgtgtaattgctccacgtttcaggaggtaggaatgttaagctgtcacaattgcgaatatgaagtgtttgcaaagaagtgggt |
11244274 |
T |
|
| Q |
237 |
agaccacttgggggaaatgcagtgagaga |
265 |
Q |
| |
|
|||||| ||| ||||||||||||||||| |
|
|
| T |
11244275 |
agaccatttgtaggaaatgcagtgagaga |
11244303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 10085799 - 10085731
Alignment:
| Q |
16 |
atgaaggtgtttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagca |
84 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| || ||||||||||| || ||||||||||||||||| |
|
|
| T |
10085799 |
atgaaggactttctaaaataaaaatggaatccaaacacctacaatcacgtatgtcaagtgtttggagca |
10085731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 10192719 - 10192651
Alignment:
| Q |
16 |
atgaaggtgtttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagca |
84 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| || ||||||||||| || ||||||||||||||||| |
|
|
| T |
10192719 |
atgaaggactttctaaaataaaaatggaatccaaacacctacaatcacgtatgtcaagtgtttggagca |
10192651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 270
Target Start/End: Complemental strand, 13397958 - 13397764
Alignment:
| Q |
76 |
tttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccacgtttc |
175 |
Q |
| |
|
||||||||||||| ||||||| ||| | ||||| ||||||| |||||||| | | ||| | | | |||||||||| |||||||||||||| ||||| |
|
|
| T |
13397958 |
tttggagcacaggaaaaccattcagttgaaaggaggtaagtgaatcacaacaattttttaactctaaagtcacaagtgatgtgtaattgctccatgtttc |
13397859 |
T |
|
| Q |
176 |
agaaggtagaaaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaa |
270 |
Q |
| |
|
|| | | | || | ||| |||| ||| || | ||| ||||||| ||||| |||||||| |||||| ||| ||||||||||||||||| |||| |
|
|
| T |
13397858 |
aggacgcaagaatgctaaattctgacactcatctatacgaagtgactgcaacgaagtgggaagaccatttgctggaaatgcagtgagagaggaaa |
13397764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 25 - 304
Target Start/End: Original strand, 55142 - 55421
Alignment:
| Q |
25 |
tttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcaca |
124 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
55142 |
tttctgaaatacaaatggaaaccagactcctacatctacttatgtcaagtgtttggagggcagggaaaccatcaagtggaaaggatgtaagtgaatcaca |
55241 |
T |
|
| Q |
125 |
actactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgc |
224 |
Q |
| |
|
|||| ||| || |||||| |||||||| |||||||||||||||||||||| |||||| |||||||| |||||||| | || |||||||||||||||| |
|
|
| T |
55242 |
actatatgatatattaagactgacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacatttttcaatatgaagtgattgc |
55341 |
T |
|
| Q |
225 |
aatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgct |
304 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| |
|
|
| T |
55342 |
aatgaagtgggtagtccacttgagggaaatgcagtgagagaagaaagtgaatggagtttcaagtgtgtaagacaagtgct |
55421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 11487567 - 11487342
Alignment:
| Q |
16 |
atgaaggtgtttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaag |
115 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| |||||||||| || | ||| |||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
11487567 |
atgaaggactttctaaaataaaaatggaatccagacacctacaatcatatagttttagtctttggagcgcagggaaaccatcaagtggaaaggatgtaag |
11487468 |
T |
|
| Q |
116 |
tgcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatga |
215 |
Q |
| |
|
||||||||| ||||| |||| | ||| |||||| || ||||||||||||||||||||| ||| || || ||||| ||||||||| | || | | |
|
|
| T |
11487467 |
tgcatcacagctactaaataactcaagcgacacaagagacttgtaattgctccacgtttcaggaggaaggaatgataaattctcacaactatgaacacaa |
11487368 |
T |
|
| Q |
216 |
agtgattgcaatgaagtgggtagacc |
241 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
11487367 |
agtgattgcaatgaagtaggtagacc |
11487342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 44955211 - 44955304
Alignment:
| Q |
37 |
aaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcacaactact |
130 |
Q |
| |
|
|||| |||||||||||||||||| |||| | || |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| |
|
|
| T |
44955211 |
aaattgaatccagactcctacaaccactaatgttaagtctttggagcacagggaaaccatcaagtgggaatgatttaagtgcatcacagctact |
44955304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 26909425 - 26909154
Alignment:
| Q |
17 |
tgaaggtgtttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagt |
116 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| |||||||||||| | | ||| ||||||| |||||||||||||||| || || ||| |||| |
|
|
| T |
26909425 |
tgaaggagtttctgaaatataaatggaatccacactcctacaatcgtaaattttaagactttggagagcagggaaaccatcaagcggaaatgattcaagt |
26909326 |
T |
|
| Q |
117 |
gcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaa |
216 |
Q |
| |
|
|||||||| ||| |||| | || |||||||||| |||||||||||||| |||||| |||||| |||||||| ||| |||| || ||| | || |
|
|
| T |
26909325 |
gcatcacagctatgatataactcaatgttcacaagtgatgtgtaattgctccaggtttcaagaggtaggaaggataaattcaaacaaaattcaatttcaa |
26909226 |
T |
|
| Q |
217 |
gtgattgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagt |
288 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| | || ||| |||||||||| |||| |||||| |
|
|
| T |
26909225 |
ttgattgcaatgaagtgggtagaccacttgagggtaatgcggcgatagatgaaagagaatagagtttcaagt |
26909154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 71 - 233
Target Start/End: Original strand, 17850512 - 17850674
Alignment:
| Q |
71 |
aagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccac |
170 |
Q |
| |
|
|||| ||| |||| |||| |||||||| | || ||| || ||||||||||| || || |||||||| | ||||||| ||||||| ||||||||| ||||| |
|
|
| T |
17850512 |
aagtctttcgagcgcaggaaaaccatccaatgagaaagaggtaagtgcatcgcagctgctccataactcaagactcgcaagtgatgtgtaattgttccac |
17850611 |
T |
|
| Q |
171 |
gtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgcaatgaagtg |
233 |
Q |
| |
|
||||||| ||| | |||||||| |||| ||| ||||||||||||| |||||||||||| |
|
|
| T |
17850612 |
gtttcaggaggcatgaaggataaattcttacacatactaatatgaagtgactgcaatgaagtg |
17850674 |
T |
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