View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16010_high_14 (Length: 272)
Name: NF16010_high_14
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 25 - 257
Target Start/End: Complemental strand, 25225862 - 25225630
Alignment:
| Q |
25 |
aatgttggagatggagattctgttacaattttctttctcatcaagtatcatctaattatagtttcatgtattaatttcaacactcatatttatcaagcaa |
124 |
Q |
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| T |
25225862 |
aatgttgcagatggagattctgttacaattttctgtctcatcaagtatcatctaattatagtttcatgtattaacttcaacactcatatttatcaatcaa |
25225763 |
T |
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| Q |
125 |
ataatctttttatggattcaactataaaaaattgaaatataataagaccaaattaagaaagcatatgtacctcaagtatgcgccaattagggactttaga |
224 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25225762 |
ataatctttttatggattcaactataaacacttgaaatataataagaccaaatgaagaaagcatatgtacctcaagtatgcgccaattagggacgttaga |
25225663 |
T |
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| Q |
225 |
agaatggttaaagacaaaagagattgttccctt |
257 |
Q |
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| T |
25225662 |
agaatggttaaagacaaaagagattgttccctt |
25225630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 25 - 257
Target Start/End: Complemental strand, 25290018 - 25289786
Alignment:
| Q |
25 |
aatgttggagatggagattctgttacaattttctttctcatcaagtatcatctaattatagtttcatgtattaatttcaacactcatatttatcaagcaa |
124 |
Q |
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| T |
25290018 |
aatgttgcagatggagattctgttacaattttctgtctcatcaagtatcatctaattatagtttcatgtattaacttcaacactcatatttatcaatcaa |
25289919 |
T |
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| Q |
125 |
ataatctttttatggattcaactataaaaaattgaaatataataagaccaaattaagaaagcatatgtacctcaagtatgcgccaattagggactttaga |
224 |
Q |
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| T |
25289918 |
ataatctttttatggattcaactataaacacttgaaatataataagaccaaatgaagaaagcatatgtacctcaagtatgcgccaattagggacgttaga |
25289819 |
T |
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| Q |
225 |
agaatggttaaagacaaaagagattgttccctt |
257 |
Q |
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| T |
25289818 |
agaatggttaaagacaaaagagattgttccctt |
25289786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 25727376 - 25727618
Alignment:
| Q |
15 |
gggaataaataatgttggagatggagattctgttacaattttctttctcatcaagtatcatctaattatagtttcatgtattaatttcaacactcatatt |
114 |
Q |
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| T |
25727376 |
gggaattaataatgatggagatggagattctgttacaattttctgtctcatcaagtatcatctaattatagtttcatgtattaatttcaacactcatatt |
25727475 |
T |
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| Q |
115 |
tatcaagcaaataatctttttatggattcaactataaaaaattgaaatataataagaccaaattaagaaagcatatgtacctcaagtatgcgccaattag |
214 |
Q |
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| T |
25727476 |
tatcaatcaaacaatctttttatgaattcaactataaacacttgaaatataacaagaccaaatgaagaaagcatatgtacctcaagcatgcgccaattag |
25727575 |
T |
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| Q |
215 |
ggactttagaagaatggttaaagacaaaagagattgttccctt |
257 |
Q |
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| T |
25727576 |
ggacattagaagaatggttatagacaaaagagattgttccctt |
25727618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 26097057 - 26097127
Alignment:
| Q |
156 |
ttgaaatataataagaccaaattaagaaagcatatgtacctcaagtatgcgccaattagggactttagaag |
226 |
Q |
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| T |
26097057 |
ttgaaatataataagaccaaaagaagaaagcgtatgtacctgaagcatgcgccaattagggacattagaag |
26097127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 25221882 - 25221961
Alignment:
| Q |
178 |
taagaaagcatatgtacctcaagtatgcgccaattagggactttagaagaatggttaaagacaaaagagattgttccctt |
257 |
Q |
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| T |
25221882 |
taagaaagcatatgcacctcaagaatgcgccaattagggacattacaagaataattaaagacagtagagattgtcccctt |
25221961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 25286037 - 25286116
Alignment:
| Q |
178 |
taagaaagcatatgtacctcaagtatgcgccaattagggactttagaagaatggttaaagacaaaagagattgttccctt |
257 |
Q |
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| T |
25286037 |
taagaaagcatatgcacctcaagaatgcgccaattagggacattacaagaataattaaagacagtagagattgtcccctt |
25286116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 26100573 - 26100632
Alignment:
| Q |
156 |
ttgaaatataataagaccaaattaagaaagcatatgtacctcaagtatgcgccaattagg |
215 |
Q |
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| T |
26100573 |
ttgaactataataagaccaaaagaagaaagcagatgcacctgaagaatgcgccaattagg |
26100632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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